Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenylate cyclase | SAMN05443579_102127 | Not Available | Positive | 1340680 - 1342614 | 70998.5 |
| vanillate o-demethylase ferredoxin subunit | SAMN05443579_102128 | Not Available | Negative | 1342611 - 1343585 | 34273.1 |
| rieske | SAMN05443579_102129 | Not Available | Negative | 1343582 - 1344814 | 45660.1 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_102130 | Not Available | Negative | 1344811 - 1345812 | 35368.6 |
| transcriptional regulator, lysr family | SAMN05443579_102131 | Not Available | Positive | 1345934 - 1346842 | 33493.2 |
| transcriptional regulator, tetr family | SAMN05443579_102132 | Not Available | Negative | 1346829 - 1347578 | 26909.3 |
| glutamate-1-semialdehyde 2,1-aminomutase | SAMN05443579_102133 | Not Available | Positive | 1347700 - 1349004 | 46215.4 |
| thioredoxin reductase (nadph) | SAMN05443579_102134 | Not Available | Negative | 1349011 - 1350084 | 37454.9 |
| ferredoxin | SAMN05443579_102135 | Not Available | Negative | 1350042 - 1350371 | 12072.4 |
| sulfate adenylyltransferase subunit 1 | SAMN05443579_102136 | Not Available | Negative | 1350414 - 1351742 | 47461.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
