Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid desaturase | SAMN05443579_10266 | Not Available | Positive | 1279821 - 1280726 | 35396.9 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN05443579_10267 | Not Available | Positive | 1280730 - 1282655 | 70652.8 |
| hypothetical protein | SAMN05443579_10268 | Not Available | Positive | 1282642 - 1283577 | 34747.1 |
| hypothetical protein | SAMN05443579_10269 | Not Available | Positive | 1283595 - 1283966 | 13595.0 |
| hypothetical protein | SAMN05443579_10270 | Not Available | Positive | 1283953 - 1284210 | 8993.82 |
| hypothetical protein | SAMN05443579_10271 | Not Available | Positive | 1284491 - 1285054 | 20826.5 |
| hypothetical protein | SAMN05443579_10272 | Not Available | Negative | 1285065 - 1285916 | 32530.6 |
| transcriptional regulator, tetr family | SAMN05443579_10273 | Not Available | Positive | 1286047 - 1286673 | 22690.0 |
| abc-2 type transport system permease protein | SAMN05443579_10274 | Not Available | Negative | 1286670 - 1287818 | 41221.8 |
| abc-2 type transport system permease protein | SAMN05443579_10275 | Not Available | Negative | 1287818 - 1289002 | 41846.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
