Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | SAMN05443579_10225 | Not Available | Negative | 1234871 - 1235203 | 12029.6 |
| atp-dependent helicase/nuclease subunit b | SAMN05443579_10226 | Not Available | Positive | 1235361 - 1237946 | 93429.7 |
| atp-dependent helicase/nuclease subunit a | SAMN05443579_10227 | Not Available | Positive | 1237943 - 1241206 | 119005.0 |
| hypothetical protein | SAMN05443579_10228 | Not Available | Positive | 1241203 - 1242444 | 43161.9 |
| dna polymerase-3 subunit gamma/tau | SAMN05443579_10230 | Not Available | Positive | 1242737 - 1244602 | 66481.8 |
| hypothetical protein | SAMN05443579_10231 | Not Available | Positive | 1244727 - 1245059 | 11867.6 |
| dna replication and repair protein recr | SAMN05443579_10232 | Not Available | Positive | 1245084 - 1245674 | 21184.6 |
| uncharacterized conserved protein, mapeg superfamily | SAMN05443579_10233 | Not Available | Positive | 1245745 - 1246137 | 14121.5 |
| nitt/taut family transport system substrate-binding protein | SAMN05443579_10234 | Not Available | Positive | 1246298 - 1247332 | 36192.7 |
| nitt/taut family transport system atp-binding protein | SAMN05443579_10235 | Not Available | Positive | 1247407 - 1248222 | 29807.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
