Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad+ kinase | SAMN05443579_1011099 | Not Available | Positive | 1196401 - 1197309 | 32517.1 |
| dna repair protein recn (recombination protein n) | SAMN05443579_1011100 | Not Available | Positive | 1197311 - 1198996 | 60082.1 |
| upf0042 nucleotide-binding protein | SAMN05443579_1011101 | Not Available | Positive | 1199028 - 1199903 | 32639.1 |
| a/g-specific dna-adenine glycosylase | SAMN05443579_1011102 | Not Available | Negative | 1199931 - 1201034 | 40673.8 |
| dynamin family protein | SAMN05443579_1011103 | Not Available | Negative | 1201042 - 1203009 | 73163.9 |
| dna-(apurinic or apyrimidinic site) lyase | SAMN05443579_1011104 | Not Available | Negative | 1203119 - 1203928 | 29525.2 |
| tetratricopeptide repeat-containing protein | SAMN05443579_1011105 | Not Available | Positive | 1204267 - 1205901 | 60275.9 |
| outer membrane lipoprotein lolb | SAMN05443579_1011106 | Not Available | Positive | 1206002 - 1206445 | 15643.6 |
| 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase | SAMN05443579_1011107 | Not Available | Positive | 1206442 - 1207332 | 32081.4 |
| Trna-gln | Not Available | Not Available | Positive | 1207405 - 1207478 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
