Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein yccc | SAMN05443579_10197 | Not Available | Positive | 101243 - 103519 | 81867.1 |
| small-conductance mechanosensitive channel | SAMN05443579_10198 | Not Available | Positive | 103516 - 104607 | 39695.1 |
| hypothetical protein | SAMN05443579_10199 | Not Available | Positive | 104637 - 105029 | 14177.9 |
| uncharacterized protein | SAMN05443579_101100 | Not Available | Negative | 105057 - 106289 | 44589.3 |
| suppressor of fused protein (sufu) | SAMN05443579_101101 | Not Available | Negative | 106297 - 106959 | 24720.2 |
| protein of unknown function | SAMN05443579_101102 | Not Available | Negative | 107010 - 107507 | 17774.0 |
| transcriptional regulator, lysr family | SAMN05443579_101103 | Not Available | Negative | 107611 - 108540 | 33528.2 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101104 | Not Available | Positive | 108677 - 109681 | 34354.0 |
| dna-binding transcriptional regulator, marr family | SAMN05443579_101105 | Not Available | Negative | 109692 - 110279 | 21323.0 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_101106 | Not Available | Positive | 110399 - 111409 | 35962.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
