Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine dehydrogenase yags fad-binding subunit | SAMN05443579_1011079 | Not Available | Negative | 1177759 - 1178709 | 33599.5 |
| xanthine dehydrogenase yagt iron-sulfur-binding subunit | SAMN05443579_1011080 | Not Available | Negative | 1178706 - 1179362 | 22675.0 |
| signal transduction histidine kinase | SAMN05443579_1011081 | Not Available | Negative | 1179649 - 1181436 | 63656.5 |
| two component transcriptional regulator, luxr family | SAMN05443579_1011082 | Not Available | Negative | 1181433 - 1182041 | 21684.4 |
| hypothetical protein | SAMN05443579_1011083 | Not Available | Positive | 1182170 - 1183912 | 58518.4 |
| hypothetical protein | SAMN05443579_1011084 | Not Available | Negative | 1184107 - 1185192 | 41103.3 |
| Trna-ser | Not Available | Not Available | Positive | 1185344 - 1185431 | Not Available |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN05443579_1011086 | Not Available | Negative | 1185467 - 1186741 | 46885.0 |
| xtp/ditp diphosphohydrolase | SAMN05443579_1011087 | Not Available | Negative | 1186732 - 1187331 | 21188.3 |
| ribonuclease ph | SAMN05443579_1011088 | Not Available | Negative | 1187384 - 1188115 | 25642.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
