Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urease subunit gamma | SAMN05443579_1011029 | Not Available | Positive | 1124558 - 1124860 | 10891.4 |
| urease accessory protein | SAMN05443579_1011030 | Not Available | Positive | 1124898 - 1125503 | 20093.2 |
| urease subunit beta | SAMN05443579_1011031 | Not Available | Positive | 1125520 - 1125825 | 11034.1 |
| chemosensory pili system protein chpe/l-lysine exporter family protein lyse/argo | SAMN05443579_1011032 | Not Available | Positive | 1125838 - 1126521 | 23751.0 |
| urease. metallo peptidase. merops family m38 | SAMN05443579_1011033 | Not Available | Positive | 1126509 - 1128227 | 60734.8 |
| urease accessory protein | SAMN05443579_1011034 | Not Available | Positive | 1128329 - 1128910 | 20953.9 |
| urease accessory protein | SAMN05443579_1011035 | Not Available | Positive | 1129243 - 1129914 | 24279.7 |
| urease accessory protein | SAMN05443579_1011036 | Not Available | Positive | 1129938 - 1130588 | 23548.6 |
| hypothetical protein | SAMN05443579_1011037 | Not Available | Negative | 1130599 - 1131120 | 18156.6 |
| 2-oxo-3-hexenedioate decarboxylase | SAMN05443579_1011038 | Not Available | Positive | 1131236 - 1132033 | 28866.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
