Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate/aspartate transport system substrate-binding protein | SAMN05443579_1011019 | Not Available | Negative | 1112418 - 1113326 | 32209.7 |
| predicted transcriptional regulator yheo, contains pas and dna-binding hth domains | SAMN05443579_1011020 | Not Available | Positive | 1113492 - 1114118 | 22935.3 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05443579_1011021 | Not Available | Negative | 1114122 - 1115099 | 33755.9 |
| threonine synthase | SAMN05443579_1011022 | Not Available | Negative | 1115143 - 1116351 | 41916.1 |
| dna-binding transcriptional regulator, lysr family | SAMN05443579_1011023 | Not Available | Positive | 1116459 - 1117379 | 33963.4 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05443579_1011024 | Not Available | Negative | 1117384 - 1118250 | 32395.3 |
| conserved protein containing a zn-ribbon-like motif, possibly rna-binding | SAMN05443579_1011025 | Not Available | Positive | 1118394 - 1119026 | 22793.2 |
| hypothetical protein | SAMN05443579_1011026 | Not Available | Negative | 1119013 - 1119714 | 24877.4 |
| two component transcriptional regulator, luxr family | SAMN05443579_1011027 | Not Available | Negative | 1119790 - 1120833 | 37961.8 |
| signal transduction histidine kinase | SAMN05443579_1011028 | Not Available | Negative | 1120823 - 1124476 | 131901.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
