Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05443579_1011009 | Not Available | Negative | 1099026 - 1100999 | 71891.2 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05443579_1011010 | Not Available | Negative | 1101023 - 1102990 | 71163.1 |
| 8-oxo-dgtpase | SAMN05443579_1011011 | Not Available | Negative | 1103077 - 1103532 | 16608.9 |
| hypothetical protein | SAMN05443579_1011012 | Not Available | Negative | 1103529 - 1104404 | 32576.6 |
| glutamate n-acetyltransferase | SAMN05443579_1011013 | Not Available | Negative | 1104412 - 1105641 | 42874.2 |
| protein translocase subunit seca | SAMN05443579_1011014 | Not Available | Negative | 1105667 - 1108453 | 104285.0 |
| hypothetical protein | SAMN05443579_1011015 | Not Available | Positive | 1108675 - 1108983 | 11255.8 |
| ornithine cyclodeaminase | SAMN05443579_1011016 | Not Available | Positive | 1109050 - 1110039 | 34625.3 |
| d-serine deaminase, pyridoxal phosphate-dependent | SAMN05443579_1011017 | Not Available | Positive | 1110060 - 1111202 | 40284.4 |
| threonine synthase | SAMN05443579_1011018 | Not Available | Negative | 1111243 - 1112385 | 40925.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
