Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PDC80 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1362819 bp
Thymine Count
1362565 bp
Guanine Count
3114901 bp
Cytosine Count
3122091 bp
Genome Length
8962376 bp
Protein-coding Genes
8074 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein, rmlc-like cupin domain | SAMN05443579_101989 | Not Available | Positive | 1080700 - 1081212 | 18440.5 |
| hemolysin, contains cbs domains | SAMN05443579_101990 | Not Available | Positive | 1081292 - 1082575 | 47361.7 |
| soluble lytic murein transglycosylase | SAMN05443579_101991 | Not Available | Negative | 1082591 - 1083274 | 25313.4 |
| prolyl-trna synthetase | SAMN05443579_101992 | Not Available | Negative | 1083271 - 1085016 | 63660.7 |
| putative (di)nucleoside polyphosphate hydrolase | SAMN05443579_101993 | Not Available | Positive | 1085154 - 1085831 | 26420.0 |
| cnp1-like family protein | SAMN05443579_101994 | Not Available | Positive | 1085923 - 1086372 | 16510.6 |
| glutamate 5-kinase | SAMN05443579_101995 | Not Available | Negative | 1086442 - 1087581 | 40256.6 |
| gtp-binding protein | SAMN05443579_101996 | Not Available | Negative | 1087661 - 1088737 | 39038.0 |
| large subunit ribosomal protein l27 | SAMN05443579_101997 | Not Available | Negative | 1088809 - 1089069 | 8942.93 |
| lsu ribosomal protein l21p | SAMN05443579_101998 | Not Available | Negative | 1089082 - 1089393 | 11295.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
