Geodermatophilus obscurus strain DSM 43161

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus strain DSM 43161 is a Gram-negative bacterium characterized by its filamentous cell arrangement and cocci shape. This species is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. It is strictly aerobic, requiring oxygen for growth and survival. G. obscurus is found in unique habitats, specifically within rock varnish in desert environments, where it adapts to the extreme conditions typical of these ecosystems. This organism does not exhibit mobility, as it lacks flagella, and it is free-living, suggesting that it does not depend on other organisms for its survival. The optimal growth temperature for G. obscurus is around 29°C, placing it within the mesophilic temperature range. With a single replicon, this strain demonstrates a simplified genomic structure, which is often associated with organisms adapted to stable environments. The ecological role of G. obscurus in desert habitats is likely significant, as its presence in rock varnish indicates a potential contribution to the biogeochemical cycling of organic materials in these arid ecosystems. Its ability to thrive in such a niche underscores the adaptability of microbial life and its importance in maintaining ecological balance in extreme environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
Strainstrain DSM 43161

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Geodermatophilus obscurus strain DSM 43161
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
Habitatrock varnish in deserts
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Geodermatophilus obscurus strain DSM 43161 genome assembly,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4697 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05660359_00555Not AvailableNegative618000 - 61888729241.5
hypothetical proteinSAMN05660359_00556Not AvailablePositive619002 - 61967023529.3
glycine dehydrogenase (decarboxylating) alpha subunit /glycine dehydrogenase (decarboxylating) beta subunitSAMN05660359_00557Not AvailableNegative619731 - 622724104710.0
merr hth family regulatory proteinSAMN05660359_00558Not AvailableNegative622946 - 62352120420.0
hypothetical proteinSAMN05660359_00559Not AvailableNegative623777 - 62426217471.8
merr family regulatory proteinSAMN05660359_00560Not AvailableNegative624355 - 62516128001.1
zinc-ribbon domain-containing proteinSAMN05660359_00561Not AvailableNegative625179 - 62569718061.0
glycine cleavage system h proteinSAMN05660359_00562Not AvailableNegative625960 - 62638214200.1
uncharacterized conserved protein ylxw, upf0749 familySAMN05660359_00563Not AvailableNegative626468 - 62731629219.2
small basic proteinSAMN05660359_00564Not AvailableNegative627313 - 62764511417.5

Displaying genes 561 – 570 of 4753 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.