Geodermatophilus obscurus strain DSM 43161

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus strain DSM 43161 is a Gram-negative bacterium characterized by its filamentous cell arrangement and cocci shape. This species is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. It is strictly aerobic, requiring oxygen for growth and survival. G. obscurus is found in unique habitats, specifically within rock varnish in desert environments, where it adapts to the extreme conditions typical of these ecosystems. This organism does not exhibit mobility, as it lacks flagella, and it is free-living, suggesting that it does not depend on other organisms for its survival. The optimal growth temperature for G. obscurus is around 29°C, placing it within the mesophilic temperature range. With a single replicon, this strain demonstrates a simplified genomic structure, which is often associated with organisms adapted to stable environments. The ecological role of G. obscurus in desert habitats is likely significant, as its presence in rock varnish indicates a potential contribution to the biogeochemical cycling of organic materials in these arid ecosystems. Its ability to thrive in such a niche underscores the adaptability of microbial life and its importance in maintaining ecological balance in extreme environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
Strainstrain DSM 43161

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Geodermatophilus obscurus strain DSM 43161
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
Habitatrock varnish in deserts
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Geodermatophilus obscurus strain DSM 43161 genome assembly,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4697 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
anti-sigma b factor antagonistSAMN05660359_00026Not AvailableNegative24188 - 2458313770.2
hypothetical proteinSAMN05660359_00027Not AvailableNegative24857 - 2537218073.0
protein of unknown functionSAMN05660359_00028Not AvailablePositive25554 - 2617121504.7
dna end-binding protein kuSAMN05660359_00029Not AvailablePositive26299 - 2726735499.0
bifunctional non-homologous end joining protein ligdSAMN05660359_00030Not AvailablePositive27313 - 2826034075.3
bifunctional non-homologous end joining protein ligdSAMN05660359_00031Not AvailablePositive28271 - 2918833830.5
formyltetrahydrofolate deformylaseSAMN05660359_00032Not AvailablePositive29185 - 3010533433.2
benzoate transportSAMN05660359_00033Not AvailablePositive30204 - 3152044538.1
pac2 family proteinSAMN05660359_00034Not AvailableNegative31525 - 3247534084.3
predicted purr-regulated permease permSAMN05660359_00035Not AvailableNegative32543 - 3393448120.3

Displaying genes 31 – 40 of 4753 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.