Geodermatophilus obscurus strain DSM 43161

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus strain DSM 43161 is a Gram-negative bacterium characterized by its filamentous cell arrangement and cocci shape. This species is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. It is strictly aerobic, requiring oxygen for growth and survival. G. obscurus is found in unique habitats, specifically within rock varnish in desert environments, where it adapts to the extreme conditions typical of these ecosystems. This organism does not exhibit mobility, as it lacks flagella, and it is free-living, suggesting that it does not depend on other organisms for its survival. The optimal growth temperature for G. obscurus is around 29°C, placing it within the mesophilic temperature range. With a single replicon, this strain demonstrates a simplified genomic structure, which is often associated with organisms adapted to stable environments. The ecological role of G. obscurus in desert habitats is likely significant, as its presence in rock varnish indicates a potential contribution to the biogeochemical cycling of organic materials in these arid ecosystems. Its ability to thrive in such a niche underscores the adaptability of microbial life and its importance in maintaining ecological balance in extreme environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
Strainstrain DSM 43161

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Geodermatophilus obscurus strain DSM 43161
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
Habitatrock varnish in deserts
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Geodermatophilus obscurus strain DSM 43161 genome assembly,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4697 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized domain 1-containing proteinSAMN05660359_00277Not AvailableNegative286212 - 28664314827.9
dna-binding transcriptional regulator, lrp familySAMN05660359_00278Not AvailableNegative286669 - 28718418005.7
4-hydroxyphenylpyruvate dioxygenaseSAMN05660359_00279Not AvailablePositive287347 - 28855244138.8
transcription factor whibSAMN05660359_00280Not AvailableNegative288685 - 28917317991.2
uncharacterized conserved proteinSAMN05660359_00281Not AvailablePositive289483 - 28982712046.1
rna polymerase sigma-70 factor, ecf subfamilySAMN05660359_00282Not AvailablePositive289832 - 29107944645.9
uncharacterized protein, upf0303 familySAMN05660359_00283Not AvailableNegative291076 - 29154316534.5
hypothetical proteinSAMN05660359_00284Not AvailableNegative291540 - 29182110230.3
xylitol oxidaseSAMN05660359_00285Not AvailableNegative291832 - 29312146327.8
cold shock protein (beta-ribbon, cspa family)SAMN05660359_00286Not AvailableNegative293237 - 2934407256.37

Displaying genes 281 – 290 of 4753 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.