Geodermatophilus obscurus strain DSM 43161

Gram-negativeCocciNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Geodermatophilales

Family

Geodermatophilaceae

Genus

Geodermatophilus

Description

Geodermatophilus obscurus strain DSM 43161 is a Gram-negative bacterium characterized by its filamentous cell arrangement and cocci shape. This species is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. It is strictly aerobic, requiring oxygen for growth and survival. G. obscurus is found in unique habitats, specifically within rock varnish in desert environments, where it adapts to the extreme conditions typical of these ecosystems. This organism does not exhibit mobility, as it lacks flagella, and it is free-living, suggesting that it does not depend on other organisms for its survival. The optimal growth temperature for G. obscurus is around 29°C, placing it within the mesophilic temperature range. With a single replicon, this strain demonstrates a simplified genomic structure, which is often associated with organisms adapted to stable environments. The ecological role of G. obscurus in desert habitats is likely significant, as its presence in rock varnish indicates a potential contribution to the biogeochemical cycling of organic materials in these arid ecosystems. Its ability to thrive in such a niche underscores the adaptability of microbial life and its importance in maintaining ecological balance in extreme environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderGeodermatophilales
FamilyGeodermatophilaceae
GenusGeodermatophilus
SpeciesGeodermatophilus obscurus
Strainstrain DSM 43161

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Geodermatophilus obscurus strain DSM 43161
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
Habitatrock varnish in deserts
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Geodermatophilus obscurus strain DSM 43161 genome assembly,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4697 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ring-1,2-phenylacetyl-coa epoxidase subunit paaaSAMN05660359_00256Not AvailableNegative263280 - 26424236100.8
phenylacetate-coa ligaseSAMN05660359_00257Not AvailablePositive264354 - 26569449376.2
transcriptional regulator, tetr familySAMN05660359_00258Not AvailablePositive265691 - 26629021649.9
fumarylacetoacetate hydrolaseSAMN05660359_00259Not AvailableNegative266297 - 26749642196.0
homogentisate 1,2-dioxygenaseSAMN05660359_00260Not AvailableNegative267493 - 26869843973.4
hypothetical proteinSAMN05660359_00261Not AvailableNegative268795 - 2689716376.63
hypothetical proteinSAMN05660359_00262Not AvailablePositive269215 - 27009631506.9
hypothetical proteinSAMN05660359_00263Not AvailableNegative270155 - 27044810246.4
dna polymerase-1SAMN05660359_00264Not AvailablePositive270510 - 27215658437.7
bile acid:na+ symporter, bass familySAMN05660359_00265Not AvailableNegative272161 - 27303930053.8

Displaying genes 261 – 270 of 4753 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.