Amycolatopsis rubida strain DSM 44637

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis rubida strain DSM 44637 is a mesophilic bacterium characterized by the presence of flagella, which contributes to its motility in various environments. This strain has an optimal growth temperature of 29°C, indicating that it thrives in moderate temperature conditions. It possesses a single replicon, suggesting a streamlined genomic organization that may facilitate efficient replication and maintenance of its genetic material. The strain is cataloged under the accession number FOWC00000000.1, which provides a reference for further genomic studies and comparisons with related species. The presence of flagella in Amycolatopsis rubida strain DSM 44637 may play a significant role in its ecological interactions, enabling the organism to navigate its environment effectively and possibly influencing its ability to access nutrients or evade competitors. The optimal growth temperature of 29°C suggests that this strain may be well adapted to environments with moderate thermal conditions, which are common in various terrestrial and aquatic habitats. Understanding these traits can provide insights into the ecological niches occupied by Amycolatopsis rubida and its potential applications in biotechnology, particularly in the field of microbial ecology and bioprocessing.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis rubida
Strainstrain DSM 44637

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis rubida strain DSM 44637 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05421854_101940Not AvailablePositive931012 - 93133812185.5
yidc/oxa1 family membrane protein insertaseSAMN05421854_101941Not AvailablePositive931343 - 93248841661.6
spoiiij-associated proteinSAMN05421854_101942Not AvailablePositive932517 - 93305619535.7
16s rrna (guanine527-n7)-methyltransferaseSAMN05421854_101943Not AvailablePositive933677 - 93435724120.3
chromosome partitioning proteinSAMN05421854_101944Not AvailablePositive934444 - 93536732764.0
chromosome partitioning protein, parb familySAMN05421854_101945Not AvailablePositive935364 - 93638336655.7
d-alanine-d-alanine ligaseSAMN05421854_101946Not AvailableNegative936515 - 93746533345.6
dna-binding transcriptional regulator, mocr family, contains an aminotransferase domainSAMN05421854_101947Not AvailableNegative937496 - 93881547874.4
fr47-like proteinSAMN05421854_101948Not AvailablePositive938997 - 93964123350.0
n-acetylmuramoyl-l-alanine amidaseSAMN05421854_101949Not AvailableNegative940491 - 94163941691.5

Displaying genes 971 – 980 of 1642 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.