Amycolatopsis rubida strain DSM 44637

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis rubida strain DSM 44637 is a mesophilic bacterium characterized by the presence of flagella, which contributes to its motility in various environments. This strain has an optimal growth temperature of 29°C, indicating that it thrives in moderate temperature conditions. It possesses a single replicon, suggesting a streamlined genomic organization that may facilitate efficient replication and maintenance of its genetic material. The strain is cataloged under the accession number FOWC00000000.1, which provides a reference for further genomic studies and comparisons with related species. The presence of flagella in Amycolatopsis rubida strain DSM 44637 may play a significant role in its ecological interactions, enabling the organism to navigate its environment effectively and possibly influencing its ability to access nutrients or evade competitors. The optimal growth temperature of 29°C suggests that this strain may be well adapted to environments with moderate thermal conditions, which are common in various terrestrial and aquatic habitats. Understanding these traits can provide insights into the ecological niches occupied by Amycolatopsis rubida and its potential applications in biotechnology, particularly in the field of microbial ecology and bioprocessing.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis rubida
Strainstrain DSM 44637

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis rubida strain DSM 44637 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
signal peptide peptidase sppaSAMN05421854_101790Not AvailableNegative779099 - 77994430093.1
two-component system, lytt family, sensor kinaseSAMN05421854_101791Not AvailableNegative779963 - 78126747610.6
formamidopyrimidine-dna glycosylaseSAMN05421854_101792Not AvailableNegative781996 - 78285630747.1
protein of unknown functionSAMN05421854_101793Not AvailableNegative782895 - 78333516466.2
rna polymerase sigma factor, sigma-70 familySAMN05421854_101794Not AvailableNegative783405 - 78503355960.8
Trna-glyNot AvailableNot AvailablePositive785245 - 785317Not Available
phospholipase cSAMN05421854_101796Not AvailablePositive785597 - 78706052750.6
immunity protein 7SAMN05421854_101797Not AvailableNegative787095 - 78749614619.2
protein of unknown functionSAMN05421854_101798Not AvailableNegative787523 - 78806820964.4
hypothetical proteinSAMN05421854_101799Not AvailableNegative788256 - 78887623353.9

Displaying genes 821 – 830 of 1642 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.