Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Pseudonocardiales
Family
Pseudonocardiaceae
Genus
Amycolatopsis
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Pseudonocardiales |
| Family | Pseudonocardiaceae |
| Genus | Amycolatopsis |
| Species | Amycolatopsis rubida |
| Strain | strain DSM 44637 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Amycolatopsis rubida strain DSM 44637 genome assembly, contig:
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
Not Available
Non-Coding Genes
Not Available
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421854_1011321 | Not Available | Negative | 1318212 - 1319045 | 30514.8 |
| hsp20 family protein | SAMN05421854_1011322 | Not Available | Positive | 1319211 - 1319630 | 15478.5 |
| predicted arabinose efflux permease, mfs family | SAMN05421854_1011323 | Not Available | Negative | 1320043 - 1321425 | 49014.6 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit | SAMN05421854_1011324 | Not Available | Negative | 1321542 - 1322714 | 41229.7 |
| rubredoxin | SAMN05421854_1011325 | Not Available | Negative | 1322716 - 1322901 | 6578.5 |
| hypothetical protein | SAMN05421854_1011326 | Not Available | Negative | 1322910 - 1323200 | 10500.2 |
| protein of unknown function | SAMN05421854_1011327 | Not Available | Negative | 1323197 - 1324063 | 32173.0 |
| 3-phenylpropionate/cinnamic acid dioxygenase, small subunit | SAMN05421854_1011328 | Not Available | Negative | 1324109 - 1324570 | 17458.6 |
| ring hydroxylating alpha subunit (catalytic domain) | SAMN05421854_1011329 | Not Available | Negative | 1324567 - 1325790 | 45771.8 |
| threonine dehydrogenase | SAMN05421854_1011330 | Not Available | Negative | 1325802 - 1326881 | 37400.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
