Pseudobutyrivibrio sp. UC1225

Gram-positive

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio sp. UC1225 is a Gram-positive bacterium that inhabits the rumen of Bos species, commonly known as cattle. This organism possesses flagella, which facilitates its motility within the complex microbial environment of the rumen. Pseudobutyrivibrio sp. UC1225 has been characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in the rumen ecosystem. The presence of Pseudobutyrivibrio sp. UC1225 in the rumen is significant, as this habitat is crucial for the digestion of fibrous plant materials in ruminants. Rumen bacteria, including Pseudobutyrivibrio species, play an essential role in breaking down complex carbohydrates, thereby aiding in nutrient absorption and overall digestive health of the host. The unique traits of Pseudobutyrivibrio sp. UC1225, such as its motility and singular replicon, may enhance its competitive advantage and functional contributions within the diverse microbial community of the rumen. Understanding the role of Pseudobutyrivibrio sp. UC1225 in the rumen microbiome can provide insights into microbial interactions and their impact on host nutrition and health. The specific accession number for this strain is FOVQ00000000.1, which serves as a reference for further studies on its genomic and functional characteristics. This knowledge can inform future research on improving livestock digestion and productivity through microbial management strategies.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio sp. UC1225
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio sp. UC1225 genome assembly, contig:

Gene Summary

Adenine Count

1032307 bp

Thymine Count

1029883 bp

Guanine Count

649089 bp

Cytosine Count

660589 bp

Genome Length

3371868 bp

Protein-coding Genes

3042 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methyl-accepting chemotaxis protein (mcp) signalling domain-containing proteinSAMN04487831_102382Not AvailablePositive1069152 - 107092163983.7
alpha-glucosidase, glycosyl hydrolase family gh31SAMN04487831_102383Not AvailablePositive1071097 - 107334986363.1
transcriptional regulator, laci familySAMN04487831_102384Not AvailablePositive1073430 - 107444337224.9
arabinogalactan oligomer / maltooligosaccharide transport system substrate-binding proteinSAMN04487831_102385Not AvailablePositive1074711 - 107597945128.6
arabinogalactan oligomer / maltooligosaccharide transport system permease proteinSAMN04487831_102386Not AvailablePositive1075991 - 107731049142.9
arabinogalactan oligomer / maltooligosaccharide transport system permease proteinSAMN04487831_102387Not AvailablePositive1077310 - 107857246702.5
alpha-amylaseSAMN04487831_102388Not AvailablePositive1078763 - 1082620141023.0
transposase dde domain-containing proteinSAMN04487831_102389Not AvailablePositive1082844 - 108416051044.8
hypothetical proteinSAMN04487831_102390Not AvailablePositive1084559 - 108500816731.9
putative efflux protein, mate familySAMN04487831_102391Not AvailablePositive1085116 - 108647749073.7

Displaying genes 971 – 980 of 3087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.