Pseudobutyrivibrio sp. UC1225

Gram-positive

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio sp. UC1225 is a Gram-positive bacterium that inhabits the rumen of Bos species, commonly known as cattle. This organism possesses flagella, which facilitates its motility within the complex microbial environment of the rumen. Pseudobutyrivibrio sp. UC1225 has been characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in the rumen ecosystem. The presence of Pseudobutyrivibrio sp. UC1225 in the rumen is significant, as this habitat is crucial for the digestion of fibrous plant materials in ruminants. Rumen bacteria, including Pseudobutyrivibrio species, play an essential role in breaking down complex carbohydrates, thereby aiding in nutrient absorption and overall digestive health of the host. The unique traits of Pseudobutyrivibrio sp. UC1225, such as its motility and singular replicon, may enhance its competitive advantage and functional contributions within the diverse microbial community of the rumen. Understanding the role of Pseudobutyrivibrio sp. UC1225 in the rumen microbiome can provide insights into microbial interactions and their impact on host nutrition and health. The specific accession number for this strain is FOVQ00000000.1, which serves as a reference for further studies on its genomic and functional characteristics. This knowledge can inform future research on improving livestock digestion and productivity through microbial management strategies.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio sp. UC1225
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio sp. UC1225 genome assembly, contig:

Gene Summary

Adenine Count

1032307 bp

Thymine Count

1029883 bp

Guanine Count

649089 bp

Cytosine Count

660589 bp

Genome Length

3371868 bp

Protein-coding Genes

3042 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenaseSAMN04487831_101572Not AvailablePositive617250 - 61812531767.3
major facilitator superfamily proteinSAMN04487831_101573Not AvailablePositive618164 - 61938142785.7
3-dehydroquinate dehydrataseSAMN04487831_101574Not AvailablePositive619407 - 62016827242.8
trap-type c4-dicarboxylate transport system, small permease componentSAMN04487831_101575Not AvailablePositive620244 - 62087324715.8
c4-dicarboxylate transporter, dctm subunitSAMN04487831_101576Not AvailablePositive620870 - 62215945365.9
tripartite atp-independent transporter solute receptor, dctp familySAMN04487831_101577Not AvailablePositive622169 - 62317637836.9
acetyltransferase (gnat) family proteinSAMN04487831_101578Not AvailablePositive623445 - 62391818440.9
rna polymerase sporulation-specific sigma factorSAMN04487831_101579Not AvailableNegative623929 - 62451622426.7
23s rrna (guanosine2251-2'-o)-methyltransferaseSAMN04487831_101580Not AvailableNegative624535 - 62528426856.3
ribonuclease-3 family proteinSAMN04487831_101581Not AvailableNegative625287 - 62572716557.8

Displaying genes 571 – 580 of 3087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.