Pseudobutyrivibrio sp. UC1225

Gram-positive

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio sp. UC1225 is a Gram-positive bacterium that inhabits the rumen of Bos species, commonly known as cattle. This organism possesses flagella, which facilitates its motility within the complex microbial environment of the rumen. Pseudobutyrivibrio sp. UC1225 has been characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in the rumen ecosystem. The presence of Pseudobutyrivibrio sp. UC1225 in the rumen is significant, as this habitat is crucial for the digestion of fibrous plant materials in ruminants. Rumen bacteria, including Pseudobutyrivibrio species, play an essential role in breaking down complex carbohydrates, thereby aiding in nutrient absorption and overall digestive health of the host. The unique traits of Pseudobutyrivibrio sp. UC1225, such as its motility and singular replicon, may enhance its competitive advantage and functional contributions within the diverse microbial community of the rumen. Understanding the role of Pseudobutyrivibrio sp. UC1225 in the rumen microbiome can provide insights into microbial interactions and their impact on host nutrition and health. The specific accession number for this strain is FOVQ00000000.1, which serves as a reference for further studies on its genomic and functional characteristics. This knowledge can inform future research on improving livestock digestion and productivity through microbial management strategies.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio sp. UC1225
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio sp. UC1225 genome assembly, contig:

Gene Summary

Adenine Count

1032307 bp

Thymine Count

1029883 bp

Guanine Count

649089 bp

Cytosine Count

660589 bp

Genome Length

3371868 bp

Protein-coding Genes

3042 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine/putrescine transport system atp-binding proteinSAMN04487831_10619Not AvailablePositive1987196 - 198826340242.5
spermidine/putrescine transport system permease proteinSAMN04487831_10620Not AvailablePositive1988256 - 198908330240.1
spermidine/putrescine transport system permease proteinSAMN04487831_10621Not AvailablePositive1989080 - 198986528918.2
spermidine/putrescine transport system substrate-binding proteinSAMN04487831_10622Not AvailablePositive1989865 - 199093241046.1
hypothetical proteinSAMN04487831_10623Not AvailableNegative1991047 - 199167623942.8
dna repair protein recn (recombination protein n)SAMN04487831_10624Not AvailableNegative1991776 - 199345561945.3
transcriptional regulator, argr familySAMN04487831_10625Not AvailableNegative1993510 - 199396516909.6
nad+ kinaseSAMN04487831_10626Not AvailableNegative1993966 - 199481130965.0
23s rrna (cytidine1920-2'-o)/16s rrna (cytidine1409-2'-o)-methyltransferaseSAMN04487831_10627Not AvailableNegative1994811 - 199560829166.2
1-deoxy-d-xylulose-5-phosphate synthaseSAMN04487831_10628Not AvailableNegative1995618 - 199747468359.4

Displaying genes 1821 – 1830 of 3087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.