Pseudobutyrivibrio sp. UC1225

Gram-positive

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Pseudobutyrivibrio

Description

Pseudobutyrivibrio sp. UC1225 is a Gram-positive bacterium that inhabits the rumen of Bos species, commonly known as cattle. This organism possesses flagella, which facilitates its motility within the complex microbial environment of the rumen. Pseudobutyrivibrio sp. UC1225 has been characterized by having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in the rumen ecosystem. The presence of Pseudobutyrivibrio sp. UC1225 in the rumen is significant, as this habitat is crucial for the digestion of fibrous plant materials in ruminants. Rumen bacteria, including Pseudobutyrivibrio species, play an essential role in breaking down complex carbohydrates, thereby aiding in nutrient absorption and overall digestive health of the host. The unique traits of Pseudobutyrivibrio sp. UC1225, such as its motility and singular replicon, may enhance its competitive advantage and functional contributions within the diverse microbial community of the rumen. Understanding the role of Pseudobutyrivibrio sp. UC1225 in the rumen microbiome can provide insights into microbial interactions and their impact on host nutrition and health. The specific accession number for this strain is FOVQ00000000.1, which serves as a reference for further studies on its genomic and functional characteristics. This knowledge can inform future research on improving livestock digestion and productivity through microbial management strategies.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusPseudobutyrivibrio
SpeciesPseudobutyrivibrio sp. UC1225
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrumen
Biotic relationshipNot Available
Host(s)Bos
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudobutyrivibrio sp. UC1225 genome assembly, contig:

Gene Summary

Adenine Count

1032307 bp

Thymine Count

1029883 bp

Guanine Count

649089 bp

Cytosine Count

660589 bp

Genome Length

3371868 bp

Protein-coding Genes

3042 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative efflux protein, mate familySAMN04487831_10594Not AvailablePositive1796133 - 179749448222.3
glycosyl hydrolases family 2SAMN04487831_10595Not AvailablePositive1797550 - 179930467716.8
uncharacterized membrane protein yjjb, duf3815 familySAMN04487831_10596Not AvailableNegative1799270 - 179972516352.1
uncharacterized membrane protein yjjp, duf1212 familySAMN04487831_10597Not AvailableNegative1799715 - 180050028001.6
chromosome partitioning atpase, mrp family, contains fe-s clusterSAMN04487831_10598Not AvailablePositive1800951 - 180181430208.4
peptidyl-prolyl cis-trans isomerase b (cyclophilin b)SAMN04487831_10599Not AvailablePositive1801930 - 180245119103.7
hypothetical proteinSAMN04487831_105100Not AvailablePositive1802563 - 180327327340.1
hemolysin, contains cbs domainsSAMN04487831_105101Not AvailableNegative1803236 - 180451047304.2
tfp pilus assembly protein pilfSAMN04487831_105102Not AvailablePositive1804687 - 180564035464.6
ribonucleoside-triphosphate reductase class iii catalytic subunitSAMN04487831_105103Not AvailablePositive1805942 - 180832990310.7

Displaying genes 1641 – 1650 of 3087 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.