Flavobacterium ummariense strain DS-12

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Flavobacterium ummariense strain DS-12 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature conditions. Importantly, Flavobacterium ummariense strain DS-12 is non-spore-forming, which suggests that it relies on vegetative growth for reproduction and survival under its environmental conditions. The strain exhibits a single replicon, which is a feature that may influence its genetic stability and replication dynamics. Its accession number, FOVI00000000.1, is associated with genomic data that can be used for further study and comparison within the Flavobacterium genus. From a biological and ecological perspective, the traits of Flavobacterium ummariense strain DS-12 suggest that it may play a role in nutrient cycling in its natural habitat, particularly in environments where organic matter is present. The aerobic nature of the bacterium indicates its potential involvement in the degradation of organic compounds in oxygen-rich environments, contributing to the overall health and functioning of microbial communities. Understanding its specific ecological roles could provide insights into its contributions to biogeochemical processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides ummariense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ummariense strain DS-12 genome assembly, contig:

Gene Summary

Adenine Count

1143058 bp

Thymine Count

1137379 bp

Guanine Count

610170 bp

Cytosine Count

603280 bp

Genome Length

3493887 bp

Protein-coding Genes

3350 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonucleoside-diphosphate reductase alpha chainSAMN05421741_1457Not AvailableNegative3355243 - 335688962122.2
ribonucleoside-diphosphate reductase beta chainSAMN05421741_1458Not AvailableNegative3356988 - 335796237905.1
ribonucleoside-diphosphate reductase alpha chainSAMN05421741_1459Not AvailablePositive3358569 - 336113696819.9
peptide chain release factor 1SAMN05421741_14510Not AvailablePositive3361165 - 336231343516.0
orotidine-5'-phosphate decarboxylaseSAMN05421741_14511Not AvailablePositive3362491 - 336330930442.3
substrate-binding proteinSAMN05421741_14512Not AvailablePositive3363311 - 336411431309.8
hypothetical proteinSAMN05421741_1461Not AvailablePositive3364486 - 336543636611.2
hypothetical proteinSAMN05421741_1462Not AvailablePositive3365500 - 33655983522.67
histone h1-like protein hc1SAMN05421741_1463Not AvailablePositive3365731 - 33659076552.89
hypothetical proteinSAMN05421741_1464Not AvailableNegative3366074 - 33661633449.86

Displaying genes 3311 – 3320 of 3451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.