Flavobacterium ummariense strain DS-12

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Flavobacterium ummariense strain DS-12 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature conditions. Importantly, Flavobacterium ummariense strain DS-12 is non-spore-forming, which suggests that it relies on vegetative growth for reproduction and survival under its environmental conditions. The strain exhibits a single replicon, which is a feature that may influence its genetic stability and replication dynamics. Its accession number, FOVI00000000.1, is associated with genomic data that can be used for further study and comparison within the Flavobacterium genus. From a biological and ecological perspective, the traits of Flavobacterium ummariense strain DS-12 suggest that it may play a role in nutrient cycling in its natural habitat, particularly in environments where organic matter is present. The aerobic nature of the bacterium indicates its potential involvement in the degradation of organic compounds in oxygen-rich environments, contributing to the overall health and functioning of microbial communities. Understanding its specific ecological roles could provide insights into its contributions to biogeochemical processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides ummariense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ummariense strain DS-12 genome assembly, contig:

Gene Summary

Adenine Count

1143058 bp

Thymine Count

1137379 bp

Guanine Count

610170 bp

Cytosine Count

603280 bp

Genome Length

3493887 bp

Protein-coding Genes

3350 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-lysNot AvailableNot AvailablePositive2579053 - 2579125Not Available
Trna-argNot AvailableNot AvailablePositive2579150 - 2579226Not Available
Trna-proNot AvailableNot AvailablePositive2579249 - 2579326Not Available
Trna-serNot AvailableNot AvailablePositive2579332 - 2579415Not Available
acetyl-coa c-acetyltransferaseSAMN05421741_12012Not AvailablePositive2579672 - 258085040449.6
sh3 domain-containing proteinSAMN05421741_12013Not AvailablePositive2580922 - 258168028681.4
atp-dependent rna helicase rhleSAMN05421741_12014Not AvailablePositive2581736 - 258308251182.0
polyphosphate:nucleotide phosphotransferase, ppk2 familySAMN05421741_12015Not AvailableNegative2583114 - 258398034755.9
hypothetical proteinSAMN05421741_12016Not AvailablePositive2584021 - 258487232050.7
numod4 motif-containing proteinSAMN05421741_12017Not AvailableNegative2584888 - 258550223970.3

Displaying genes 2561 – 2570 of 3451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.