Flavobacterium ummariense strain DS-12

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Flavobacterium ummariense strain DS-12 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature conditions. Importantly, Flavobacterium ummariense strain DS-12 is non-spore-forming, which suggests that it relies on vegetative growth for reproduction and survival under its environmental conditions. The strain exhibits a single replicon, which is a feature that may influence its genetic stability and replication dynamics. Its accession number, FOVI00000000.1, is associated with genomic data that can be used for further study and comparison within the Flavobacterium genus. From a biological and ecological perspective, the traits of Flavobacterium ummariense strain DS-12 suggest that it may play a role in nutrient cycling in its natural habitat, particularly in environments where organic matter is present. The aerobic nature of the bacterium indicates its potential involvement in the degradation of organic compounds in oxygen-rich environments, contributing to the overall health and functioning of microbial communities. Understanding its specific ecological roles could provide insights into its contributions to biogeochemical processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides ummariense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ummariense strain DS-12 genome assembly, contig:

Gene Summary

Adenine Count

1143058 bp

Thymine Count

1137379 bp

Guanine Count

610170 bp

Cytosine Count

603280 bp

Genome Length

3493887 bp

Protein-coding Genes

3350 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
wxcm-like, c-terminalSAMN05421741_11735Not AvailablePositive2443284 - 244369415771.6
udp-2-acetamido-2,6-beta-l-arabino-hexul-4-ose reductaseSAMN05421741_11736Not AvailablePositive2443722 - 244484042498.2
four helix bundle proteinSAMN05421741_11737Not AvailablePositive2444882 - 244522613015.8
udp-n-acetylglucosamine 2-epimerase (non-hydrolysing)SAMN05421741_11738Not AvailablePositive2445292 - 244643143384.4
glycosyltransferase involved in cell wall bisynthesisSAMN05421741_11739Not AvailablePositive2446437 - 244764846908.1
sugar transferase involved in lps biosynthesis (colanic, teichoic acid)SAMN05421741_11740Not AvailablePositive2447719 - 244830323148.7
methionyl-trna formyltransferase/udp-4-amino-4-deoxy-l-arabinose formyltransferase / udp-glucuronic acid dehydrogenase (udp-4-keto-hexauronic acid decarboxylating)SAMN05421741_11741Not AvailablePositive2448296 - 244927036825.2
n-acetylglucosaminyl deacetylase, lmbe familySAMN05421741_11742Not AvailablePositive2449263 - 244993724821.9
sugar o-acyltransferase, sialic acid o-acetyltransferase neud familySAMN05421741_11743Not AvailablePositive2449954 - 245059523078.4
dtdp-4-amino-4,6-dideoxygalactose transaminaseSAMN05421741_11744Not AvailablePositive2450608 - 245174441645.4

Displaying genes 2441 – 2450 of 3451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.