Flavobacterium ummariense strain DS-12

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Flavobacterium ummariense strain DS-12 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature conditions. Importantly, Flavobacterium ummariense strain DS-12 is non-spore-forming, which suggests that it relies on vegetative growth for reproduction and survival under its environmental conditions. The strain exhibits a single replicon, which is a feature that may influence its genetic stability and replication dynamics. Its accession number, FOVI00000000.1, is associated with genomic data that can be used for further study and comparison within the Flavobacterium genus. From a biological and ecological perspective, the traits of Flavobacterium ummariense strain DS-12 suggest that it may play a role in nutrient cycling in its natural habitat, particularly in environments where organic matter is present. The aerobic nature of the bacterium indicates its potential involvement in the degradation of organic compounds in oxygen-rich environments, contributing to the overall health and functioning of microbial communities. Understanding its specific ecological roles could provide insights into its contributions to biogeochemical processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides ummariense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ummariense strain DS-12 genome assembly, contig:

Gene Summary

Adenine Count

1143058 bp

Thymine Count

1137379 bp

Guanine Count

610170 bp

Cytosine Count

603280 bp

Genome Length

3493887 bp

Protein-coding Genes

3350 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gliding motility-associated c-terminal domain-containing proteinSAMN05421741_11442Not AvailablePositive2225994 - 222806077141.4
dna-binding regulatory protein, yebc/pmpr familySAMN05421741_11443Not AvailableNegative2228102 - 222881226727.7
outer membrane protein beta-barrel domain-containing proteinSAMN05421741_11444Not AvailablePositive2228897 - 222952923722.1
uncharacterized damage-inducible protein dinb (forms a four-helix bundle)SAMN05421741_11445Not AvailableNegative2229589 - 223005918291.8
kdo2-lipid iv(a) lauroyltransferaseSAMN05421741_11446Not AvailablePositive2230214 - 223110735933.3
meta domain-containing proteinSAMN05421741_11447Not AvailableNegative2231257 - 223201829200.0
3-oxoacyl-[acyl-carrier protein] reductaseSAMN05421741_11448Not AvailableNegative2232234 - 223298026202.6
na+/h+ antiporter nhacSAMN05421741_11449Not AvailableNegative2233018 - 223430747049.2
putative meta-pathway of phenol degradationSAMN05421741_11450Not AvailableNegative2234382 - 223527534398.7
spermine/spermidine synthaseSAMN05421741_11451Not AvailableNegative2235272 - 223594025719.2

Displaying genes 2231 – 2240 of 3451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.