Flavobacterium ummariense strain DS-12

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Flavobacterium ummariense strain DS-12 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature conditions. Importantly, Flavobacterium ummariense strain DS-12 is non-spore-forming, which suggests that it relies on vegetative growth for reproduction and survival under its environmental conditions. The strain exhibits a single replicon, which is a feature that may influence its genetic stability and replication dynamics. Its accession number, FOVI00000000.1, is associated with genomic data that can be used for further study and comparison within the Flavobacterium genus. From a biological and ecological perspective, the traits of Flavobacterium ummariense strain DS-12 suggest that it may play a role in nutrient cycling in its natural habitat, particularly in environments where organic matter is present. The aerobic nature of the bacterium indicates its potential involvement in the degradation of organic compounds in oxygen-rich environments, contributing to the overall health and functioning of microbial communities. Understanding its specific ecological roles could provide insights into its contributions to biogeochemical processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides ummariense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ummariense strain DS-12 genome assembly, contig:

Gene Summary

Adenine Count

1143058 bp

Thymine Count

1137379 bp

Guanine Count

610170 bp

Cytosine Count

603280 bp

Genome Length

3493887 bp

Protein-coding Genes

3350 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding transcriptional regulator, acrr familySAMN05421741_11131Not AvailableNegative1932892 - 193350023424.1
geranylgeranyl diphosphate synthase, type iiSAMN05421741_11132Not AvailablePositive1933635 - 193460636592.7
hypothetical proteinSAMN05421741_11133Not AvailableNegative1934658 - 193520320412.2
2-oxoglutarate dehydrogenase e1 componentSAMN05421741_11134Not AvailablePositive1935536 - 1938301103557.0
2-oxoglutarate dehydrogenase e2 component (dihydrolipoamide succinyltransferase)SAMN05421741_11135Not AvailablePositive1938349 - 193957243281.1
type i secretion c-terminal target domain (vc_a0849 subclass)SAMN05421741_11136Not AvailableNegative1939797 - 194006610139.9
mfs transporter, dha1 family, tetracycline resistance proteinSAMN05421741_11137Not AvailablePositive1940171 - 194138843910.6
atpase family associated with various cellular activities (aaa)SAMN05421741_11138Not AvailablePositive1941390 - 194208527025.5
dgtpaseSAMN05421741_11139Not AvailablePositive1942103 - 194343450076.8
lsu ribosomal protein l27pSAMN05421741_11140Not AvailableNegative1943503 - 19437639347.27

Displaying genes 1951 – 1960 of 3451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.