Flavobacterium ummariense strain DS-12

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Flavobacterium ummariense strain DS-12 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating its preference for moderate temperature conditions. Importantly, Flavobacterium ummariense strain DS-12 is non-spore-forming, which suggests that it relies on vegetative growth for reproduction and survival under its environmental conditions. The strain exhibits a single replicon, which is a feature that may influence its genetic stability and replication dynamics. Its accession number, FOVI00000000.1, is associated with genomic data that can be used for further study and comparison within the Flavobacterium genus. From a biological and ecological perspective, the traits of Flavobacterium ummariense strain DS-12 suggest that it may play a role in nutrient cycling in its natural habitat, particularly in environments where organic matter is present. The aerobic nature of the bacterium indicates its potential involvement in the degradation of organic compounds in oxygen-rich environments, contributing to the overall health and functioning of microbial communities. Understanding its specific ecological roles could provide insights into its contributions to biogeochemical processes in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides ummariense
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium ummariense strain DS-12 genome assembly, contig:

Gene Summary

Adenine Count

1143058 bp

Thymine Count

1137379 bp

Guanine Count

610170 bp

Cytosine Count

603280 bp

Genome Length

3493887 bp

Protein-coding Genes

3350 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05421741_10526Not AvailableNegative1034407 - 103510525657.8
fixh proteinSAMN05421741_10527Not AvailableNegative1035105 - 103555117210.6
cytochrome c oxidase accessory protein fixgSAMN05421741_10528Not AvailableNegative1035590 - 103700854211.8
cytochrome c oxidase cbb3-type subunit 3SAMN05421741_10529Not AvailableNegative1037114 - 103805534265.3
hypothetical proteinSAMN05421741_10530Not AvailableNegative1038058 - 10382617766.65
cytochrome c oxidase cbb3-type subunit i/iiSAMN05421741_10531Not AvailableNegative1038265 - 104045183343.2
cytochrome oxidase maturation protein, cbb3-typeSAMN05421741_10532Not AvailableNegative1040461 - 10406406761.39
homoserine o-acetyltransferaseSAMN05421741_10533Not AvailablePositive1041173 - 104215937735.2
aspartate kinaseSAMN05421741_10534Not AvailablePositive1042156 - 104456188191.2
o-succinylhomoserine sulfhydrylaseSAMN05421741_10535Not AvailablePositive1044564 - 104572142669.9

Displaying genes 1061 – 1070 of 3451 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.