Pseudomonas yangmingensis strain DSM 24213

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Halopseudomonas

Description

Pseudomonas yangmingensis strain DSM 24213 is a distinct bacterial strain characterized by its single replicon, indicating a singular circular chromosome structure. This trait is significant as it often contributes to the stability and efficiency of genetic replication within the organism. The strain is cataloged under the accession number FOUI00000000.1, which serves as a reference for researchers seeking to access genomic information and data pertaining to this specific strain. The unique genetic profile of Pseudomonas yangmingensis reflects its adaptability and potential roles in various environmental contexts. Pseudomonas species are known for their metabolic versatility, which often enables them to thrive in diverse ecological niches. This adaptability could suggest that Pseudomonas yangmingensis may play important roles in biogeochemical cycles or in bioremediation processes, although specific ecological roles for this strain have not been detailed in the provided data. In summary, Pseudomonas yangmingensis strain DSM 24213, with its single replicon and designated accession number, exemplifies the characteristics of the Pseudomonas genus, which is recognized for its ecological relevance and metabolic capabilities. This strain's genomic information could contribute valuable insights into its biological functions and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusHalopseudomonas
SpeciesHalopseudomonas yangmingensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas yangmingensis strain DSM 24213 genome assembly,

Gene Summary

Adenine Count

610189 bp

Thymine Count

632347 bp

Guanine Count

968911 bp

Cytosine Count

929217 bp

Genome Length

3141501 bp

Protein-coding Genes

2919 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
toxin cptaSAMN05216217_10160Not AvailablePositive54448 - 5490016726.0
l-aspartate oxidaseSAMN05216217_10161Not AvailableNegative54869 - 5649159779.7
rna polymerase sigma-70 factor, ecf subfamilySAMN05216217_10162Not AvailablePositive56817 - 5739221962.0
sigma-e factor negative regulatory protein rseaSAMN05216217_10163Not AvailablePositive57447 - 5804321455.5
sigma e regulatory protein, mucb/rsebSAMN05216217_10164Not AvailablePositive58043 - 5898734106.2
positive regulator of sigma(e), rsec/muccSAMN05216217_10165Not AvailablePositive58984 - 5947216926.0
serine protease doSAMN05216217_10166Not AvailablePositive59523 - 6094751414.9
gtp-binding protein lepaSAMN05216217_10167Not AvailablePositive61088 - 6288766019.8
signal peptidase iSAMN05216217_10168Not AvailablePositive62904 - 6378233406.7
protein of unknown functionSAMN05216217_10169Not AvailablePositive63865 - 6424214177.5

Displaying genes 81 – 90 of 2984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.