Pseudomonas yangmingensis strain DSM 24213

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Halopseudomonas

Description

Pseudomonas yangmingensis strain DSM 24213 is a distinct bacterial strain characterized by its single replicon, indicating a singular circular chromosome structure. This trait is significant as it often contributes to the stability and efficiency of genetic replication within the organism. The strain is cataloged under the accession number FOUI00000000.1, which serves as a reference for researchers seeking to access genomic information and data pertaining to this specific strain. The unique genetic profile of Pseudomonas yangmingensis reflects its adaptability and potential roles in various environmental contexts. Pseudomonas species are known for their metabolic versatility, which often enables them to thrive in diverse ecological niches. This adaptability could suggest that Pseudomonas yangmingensis may play important roles in biogeochemical cycles or in bioremediation processes, although specific ecological roles for this strain have not been detailed in the provided data. In summary, Pseudomonas yangmingensis strain DSM 24213, with its single replicon and designated accession number, exemplifies the characteristics of the Pseudomonas genus, which is recognized for its ecological relevance and metabolic capabilities. This strain's genomic information could contribute valuable insights into its biological functions and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusHalopseudomonas
SpeciesHalopseudomonas yangmingensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas yangmingensis strain DSM 24213 genome assembly,

Gene Summary

Adenine Count

610189 bp

Thymine Count

632347 bp

Guanine Count

968911 bp

Cytosine Count

929217 bp

Genome Length

3141501 bp

Protein-coding Genes

2919 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c553SAMN05216217_11044Not AvailablePositive2168637 - 216894810492.6
zinc transport system substrate-binding proteinSAMN05216217_11045Not AvailableNegative2168994 - 216991434112.8
fur family transcriptional regulator, zinc uptake regulatorSAMN05216217_11046Not AvailablePositive2170011 - 217048117491.7
zinc transport system atp-binding proteinSAMN05216217_11047Not AvailablePositive2170478 - 217125428431.5
zinc transport system permease proteinSAMN05216217_11048Not AvailablePositive2171193 - 217203229523.7
protein sco1/2SAMN05216217_11049Not AvailableNegative2172034 - 217268424415.6
excinuclease abc subunit aSAMN05216217_11050Not AvailableNegative2172681 - 2175512104257.0
predicted arabinose efflux permease, mfs familySAMN05216217_11051Not AvailablePositive2175691 - 217706448227.7
single-strand dna-binding proteinSAMN05216217_11052Not AvailablePositive2177088 - 217756717650.6
hd-gyp domain, c-di-gmp phosphodiesterase class ii (or its inactivated variant)SAMN05216217_11053Not AvailableNegative2177669 - 217940263984.5

Displaying genes 2031 – 2040 of 2984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.