Pseudomonas yangmingensis strain DSM 24213

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Halopseudomonas

Description

Pseudomonas yangmingensis strain DSM 24213 is a distinct bacterial strain characterized by its single replicon, indicating a singular circular chromosome structure. This trait is significant as it often contributes to the stability and efficiency of genetic replication within the organism. The strain is cataloged under the accession number FOUI00000000.1, which serves as a reference for researchers seeking to access genomic information and data pertaining to this specific strain. The unique genetic profile of Pseudomonas yangmingensis reflects its adaptability and potential roles in various environmental contexts. Pseudomonas species are known for their metabolic versatility, which often enables them to thrive in diverse ecological niches. This adaptability could suggest that Pseudomonas yangmingensis may play important roles in biogeochemical cycles or in bioremediation processes, although specific ecological roles for this strain have not been detailed in the provided data. In summary, Pseudomonas yangmingensis strain DSM 24213, with its single replicon and designated accession number, exemplifies the characteristics of the Pseudomonas genus, which is recognized for its ecological relevance and metabolic capabilities. This strain's genomic information could contribute valuable insights into its biological functions and potential applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusHalopseudomonas
SpeciesHalopseudomonas yangmingensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas yangmingensis strain DSM 24213 genome assembly,

Gene Summary

Adenine Count

610189 bp

Thymine Count

632347 bp

Guanine Count

968911 bp

Cytosine Count

929217 bp

Genome Length

3141501 bp

Protein-coding Genes

2919 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding transcriptional regulator, xre-family hth domainSAMN05216217_1104Not AvailableNegative2120754 - 212114314098.3
multidrug efflux pumpSAMN05216217_1105Not AvailableNegative2121563 - 2124664111572.0
membrane fusion protein, multidrug efflux systemSAMN05216217_1106Not AvailableNegative2124666 - 212574539437.4
enoyl-coa hydratase/carnithine racemaseSAMN05216217_1107Not AvailablePositive2125963 - 212682331802.0
lactoylglutathione lyaseSAMN05216217_1108Not AvailablePositive2126870 - 212741220466.1
catalase-peroxidaseSAMN05216217_1109Not AvailableNegative2127473 - 212963579835.0
predicted secreted zn-dependent proteaseSAMN05216217_11010Not AvailableNegative2129847 - 213041621346.2
acyl-coa thioester hydrolaseSAMN05216217_11011Not AvailableNegative2130413 - 213084115841.7
dna-binding transcriptional regulator, lysr familySAMN05216217_11012Not AvailableNegative2130861 - 213179334044.3
alkyl sulfatase bds1, metallo-beta-lactamase superfamilySAMN05216217_11013Not AvailablePositive2131888 - 213384972156.7

Displaying genes 1991 – 2000 of 2984 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.