Rugamonas rubra strain ATCC 43154

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Rugamonas

Description

Rugamonas rubra strain ATCC 43154 is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The strain is cataloged under the accession number FOTW00000000.1, indicating its availability in genomic databases for further research and analysis. Rugamonas rubra is part of the broader group of bacteria known for their ecological roles, particularly in the decomposition of organic matter and nutrient cycling. Understanding the genetic and phenotypic traits of this strain can provide insights into its potential applications in biotechnology, such as bioremediation or agriculture. The single-replicon structure may also suggest a streamlined genome, which could be advantageous for its adaptability to various environmental conditions. In summary, Rugamonas rubra strain ATCC 43154, with its single replicon, represents a unique microbial entity with potential ecological significance and applications in environmental microbiology. Further investigation into its metabolic pathways and interactions within ecosystems could enhance our understanding of its role in nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusRugamonas
SpeciesRugamonas rubra
Strainstrain ATCC 43154

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rugamonas rubra strain ATCC 43154 genome assembly, contig:

Gene Summary

Adenine Count

1131567 bp

Thymine Count

1121852 bp

Guanine Count

2290619 bp

Cytosine Count

2282800 bp

Genome Length

6830503 bp

Protein-coding Genes

5766 genes

Non-Coding Genes

150 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two component transcriptional regulator, lyttr familySAMN02982985_00865Not AvailablePositive977541 - 97831728106.1
surface polysaccharide o-acyltransferase, integral membrane enzymeSAMN02982985_00866Not AvailablePositive978501 - 97975145814.7
diguanylate cyclase (ggdef) domain-containing proteinSAMN02982985_00867Not AvailableNegative979748 - 98067433904.8
penicillin amidaseSAMN02982985_00868Not AvailableNegative980804 - 98327287011.6
endonuclease, uma2 family (restriction endonuclease fold)SAMN02982985_00869Not AvailablePositive983471 - 98399519242.8
gaf domain-containing proteinSAMN02982985_00870Not AvailablePositive984094 - 98459717922.8
response regulator receiver domain-containing proteinSAMN02982985_00871Not AvailablePositive984632 - 98502413844.9
pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing proteinSAMN02982985_00872Not AvailablePositive985186 - 98753485105.6
dna-binding transcriptional regulator, lysr familySAMN02982985_00873Not AvailableNegative987617 - 98855534652.9
simple sugar transport system permease proteinSAMN02982985_00874Not AvailableNegative988618 - 98961334421.4

Displaying genes 971 – 980 of 5916 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.