Rugamonas rubra strain ATCC 43154

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Rugamonas

Description

Rugamonas rubra strain ATCC 43154 is characterized by having a single replicon, which is significant for its genetic stability and replication processes. The strain is cataloged under the accession number FOTW00000000.1, indicating its availability in genomic databases for further research and analysis. Rugamonas rubra is part of the broader group of bacteria known for their ecological roles, particularly in the decomposition of organic matter and nutrient cycling. Understanding the genetic and phenotypic traits of this strain can provide insights into its potential applications in biotechnology, such as bioremediation or agriculture. The single-replicon structure may also suggest a streamlined genome, which could be advantageous for its adaptability to various environmental conditions. In summary, Rugamonas rubra strain ATCC 43154, with its single replicon, represents a unique microbial entity with potential ecological significance and applications in environmental microbiology. Further investigation into its metabolic pathways and interactions within ecosystems could enhance our understanding of its role in nutrient cycling and organic matter decomposition.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusRugamonas
SpeciesRugamonas rubra
Strainstrain ATCC 43154

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rugamonas rubra strain ATCC 43154 genome assembly, contig:

Gene Summary

Adenine Count

1131567 bp

Thymine Count

1121852 bp

Guanine Count

2290619 bp

Cytosine Count

2282800 bp

Genome Length

6830503 bp

Protein-coding Genes

5766 genes

Non-Coding Genes

150 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mfs transporter, dha1 family, bicyclomycin/chloramphenicol resistance proteinSAMN02982985_00815Not AvailablePositive930605 - 93180742844.6
hypothetical proteinSAMN02982985_00816Not AvailableNegative931804 - 9320559599.09
hypothetical proteinSAMN02982985_00817Not AvailablePositive932107 - 9323047551.88
transcriptional regulator, badm/rrf2 familySAMN02982985_00818Not AvailablePositive932358 - 93280716612.2
dna-binding transcriptional regulator, gntr familySAMN02982985_00819Not AvailableNegative932930 - 93359525048.0
trap-type c4-dicarboxylate transport system, substrate-binding proteinSAMN02982985_00820Not AvailablePositive933751 - 93477936974.8
trap-type c4-dicarboxylate transport system, small permease componentSAMN02982985_00821Not AvailablePositive934776 - 93533920799.6
trap transporter, dctm subunitSAMN02982985_00822Not AvailablePositive935336 - 93668547722.8
malonate decarboxylase alpha subunitSAMN02982985_00823Not AvailablePositive936685 - 93836160883.2
malonate decarboxylase delta subunitSAMN02982985_00824Not AvailablePositive938494 - 93880811123.4

Displaying genes 921 – 930 of 5916 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.