Ruminococcaceae bacterium D5

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium D5 is a member of the Ruminococcaceae family, which is notable for its role in the gut microbiota of various hosts. This bacterium has a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability and efficiency in its ecological niche. The genome of Ruminococcaceae bacterium D5 can be accessed through the accession number FORK00000000.1. Members of the Ruminococcaceae family are known to be involved in the fermentation of complex carbohydrates, which plays a crucial role in the digestion and metabolism of dietary fibers in the gut. These bacteria contribute to the production of short-chain fatty acids, which are beneficial for gut health and have various systemic effects on host metabolism. The presence of Ruminococcaceae bacterium D5 in the gut microbiota highlights the importance of microbial diversity and composition in maintaining a balanced ecosystem within the gastrointestinal tract. This bacterium may interact with other microbial species, contributing to the overall functionality of the microbiome. Given its specific traits, Ruminococcaceae bacterium D5 could serve as a valuable model organism for studying the roles of gut microbiota in health and disease. Understanding its functions and interactions could provide insights into the complexities of microbial ecosystems and their influence on the host's metabolic processes.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium D5 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2453 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclase (ggdef) domain-containing proteinSAMN02910435_00554Not AvailablePositive580064 - 58168661287.3
diguanylate cyclase (ggdef) domain-containing proteinSAMN02910435_00555Not AvailablePositive581723 - 58366673075.4
diguanylate cyclase (ggdef) domain-containing proteinSAMN02910435_00556Not AvailableNegative583870 - 58485037023.2
hypothetical proteinSAMN02910435_00557Not AvailablePositive585124 - 58560318024.4
poly-gamma-glutamate system proteinSAMN02910435_00558Not AvailableNegative585689 - 58676537853.4
poly-gamma-glutamate biosynthesis protein pgsc/capcSAMN02910435_00559Not AvailableNegative586786 - 58722915990.5
poly-gamma-glutamate synthase pgsb/capbSAMN02910435_00560Not AvailableNegative587219 - 58835241265.3
putative deor family transcriptional regulator, stage iii sporulation protein dSAMN02910435_00561Not AvailablePositive588820 - 58908910200.4
dna-binding transcriptional regulator, xre-family hth domainSAMN02910435_00562Not AvailableNegative589161 - 59038745452.8
rna polymerase, sigma subunit, rpsg/siggSAMN02910435_00563Not AvailablePositive590748 - 59151828767.9

Displaying genes 601 – 610 of 2550 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.