Ruminococcaceae bacterium D5

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium D5 is a member of the Ruminococcaceae family, which is notable for its role in the gut microbiota of various hosts. This bacterium has a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability and efficiency in its ecological niche. The genome of Ruminococcaceae bacterium D5 can be accessed through the accession number FORK00000000.1. Members of the Ruminococcaceae family are known to be involved in the fermentation of complex carbohydrates, which plays a crucial role in the digestion and metabolism of dietary fibers in the gut. These bacteria contribute to the production of short-chain fatty acids, which are beneficial for gut health and have various systemic effects on host metabolism. The presence of Ruminococcaceae bacterium D5 in the gut microbiota highlights the importance of microbial diversity and composition in maintaining a balanced ecosystem within the gastrointestinal tract. This bacterium may interact with other microbial species, contributing to the overall functionality of the microbiome. Given its specific traits, Ruminococcaceae bacterium D5 could serve as a valuable model organism for studying the roles of gut microbiota in health and disease. Understanding its functions and interactions could provide insights into the complexities of microbial ecosystems and their influence on the host's metabolic processes.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium D5 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2453 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidoglycan-n-acetylmuramic acid deacetylaseSAMN02910435_00394Not AvailablePositive408360 - 40933135708.0
hypothetical proteinSAMN02910435_00395Not AvailableNegative409513 - 41022626460.4
lincosamide and streptogramin a transport system atp-binding/permease proteinSAMN02910435_00396Not AvailablePositive410735 - 41237261412.2
glutamate racemaseSAMN02910435_00397Not AvailableNegative412610 - 41340429051.9
d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6)SAMN02910435_00398Not AvailableNegative413550 - 41488149403.8
calcineurin-like phosphoesteraseSAMN02910435_00399Not AvailablePositive415021 - 41569225513.6
hypothetical proteinSAMN02910435_00400Not AvailablePositive416044 - 41761557085.1
uncharacterized membrane protein yjjp, duf1212 familySAMN02910435_00401Not AvailablePositive417954 - 41872126849.1
uncharacterized membrane protein yjjb, duf3815 familySAMN02910435_00402Not AvailablePositive418721 - 41914914977.7
flavorubredoxinSAMN02910435_00403Not AvailableNegative419625 - 42084845840.0

Displaying genes 441 – 450 of 2550 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.