Ruminococcaceae bacterium D5

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Description

Ruminococcaceae bacterium D5 is a member of the Ruminococcaceae family, which is notable for its role in the gut microbiota of various hosts. This bacterium has a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability and efficiency in its ecological niche. The genome of Ruminococcaceae bacterium D5 can be accessed through the accession number FORK00000000.1. Members of the Ruminococcaceae family are known to be involved in the fermentation of complex carbohydrates, which plays a crucial role in the digestion and metabolism of dietary fibers in the gut. These bacteria contribute to the production of short-chain fatty acids, which are beneficial for gut health and have various systemic effects on host metabolism. The presence of Ruminococcaceae bacterium D5 in the gut microbiota highlights the importance of microbial diversity and composition in maintaining a balanced ecosystem within the gastrointestinal tract. This bacterium may interact with other microbial species, contributing to the overall functionality of the microbiome. Given its specific traits, Ruminococcaceae bacterium D5 could serve as a valuable model organism for studying the roles of gut microbiota in health and disease. Understanding its functions and interactions could provide insights into the complexities of microbial ecosystems and their influence on the host's metabolic processes.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcaceae bacterium D5 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2453 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
crispr-associated protein csd1SAMN02910435_02334Not AvailablePositive2403029 - 240481665330.0
crispr-associated protein csd2SAMN02910435_02335Not AvailablePositive2404818 - 240570833374.8
crispr-associated exonuclease cas4SAMN02910435_02336Not AvailablePositive2405705 - 240637925265.6
crisp-associated protein cas1SAMN02910435_02337Not AvailablePositive2406376 - 240740738527.5
crispr-associated protein cas2SAMN02910435_02338Not AvailablePositive2407417 - 240770711150.5
hypothetical proteinSAMN02910435_02339Not AvailableNegative2408513 - 240943332958.0
dna-binding transcriptional regulator, lysr familySAMN02910435_02340Not AvailablePositive2409651 - 241060435929.3
protein of unknown functionSAMN02910435_02341Not AvailablePositive2410591 - 241145730595.2
nte family proteinSAMN02910435_02342Not AvailablePositive2411482 - 241277748295.8
exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphataseSAMN02910435_02343Not AvailablePositive2412934 - 241383332635.8

Displaying genes 2311 – 2320 of 2550 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.