Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas isoalkanivorans |
| Strain | strain DSM 19548 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
883330 bp
Thymine Count
875776 bp
Guanine Count
1590237 bp
Cytosine Count
1626123 bp
Genome Length
4976641 bp
Protein-coding Genes
4685 genes
Non-Coding Genes
175 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SAMN04488094_1345 | Not Available | Positive | 4907288 - 4907881 | 21419.9 |
| type iv secretion system t-dna border endonuclease vird2 | SAMN04488094_1346 | Not Available | Positive | 4907868 - 4910201 | 87235.5 |
| type iv secretory system conjugative dna transfer | SAMN04488094_1347 | Not Available | Positive | 4910210 - 4911406 | 43589.7 |
| transposase, is5 family | SAMN04488094_1348 | Not Available | Positive | 4911435 - 4911701 | 10462.6 |
| transposase, mutator family | SAMN04488094_1351 | Not Available | Negative | 4911702 - 4911886 | 7066.47 |
| transglycosylase slt domain-containing protein | SAMN04488094_1352 | Not Available | Positive | 4912188 - 4913093 | 32127.1 |
| type iv secretion system protein virb5 | SAMN04488094_1353 | Not Available | Positive | 4913093 - 4913902 | 29022.2 |
| type iv secretion system protein virb8 | SAMN04488094_1354 | Not Available | Positive | 4913920 - 4914573 | 24299.9 |
| type iv secretion system protein virb9 | SAMN04488094_1355 | Not Available | Positive | 4914576 - 4915271 | 25651.3 |
| type iv secretion system protein virb10 | SAMN04488094_1356 | Not Available | Positive | 4915268 - 4916647 | 49120.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
