Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas isoalkanivorans |
| Strain | strain DSM 19548 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
883330 bp
Thymine Count
875776 bp
Guanine Count
1590237 bp
Cytosine Count
1626123 bp
Genome Length
4976641 bp
Protein-coding Genes
4685 genes
Non-Coding Genes
175 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tripartite atp-independent transporter, dctq component | SAMN04488094_11546 | Not Available | Negative | 4088499 - 4089086 | 21146.3 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN04488094_11547 | Not Available | Negative | 4089161 - 4090225 | 38494.0 |
| 3-carboxy-cis,cis-muconate cycloisomerase | SAMN04488094_11548 | Not Available | Negative | 4090292 - 4091593 | 45152.0 |
| uncharacterized conserved protein, duf849 family | SAMN04488094_11549 | Not Available | Negative | 4091601 - 4092434 | 30223.0 |
| protocatechuate 3,4-dioxygenase, alpha subunit | SAMN04488094_11550 | Not Available | Negative | 4092484 - 4093176 | 25484.0 |
| protocatechuate 3,4-dioxygenase, beta subunit | SAMN04488094_11551 | Not Available | Negative | 4093241 - 4093969 | 27400.5 |
| 4-carboxymuconolactone decarboxylase | SAMN04488094_11552 | Not Available | Negative | 4094006 - 4094383 | 13804.4 |
| hypothetical protein | SAMN04488094_11553 | Not Available | Negative | 4094376 - 4094585 | 7451.81 |
| p-hydroxybenzoate 3-monooxygenase | SAMN04488094_11554 | Not Available | Negative | 4094585 - 4095754 | 44140.0 |
| transcriptional regulator, lysr family | SAMN04488094_11555 | Not Available | Positive | 4095847 - 4096761 | 33366.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
