Tropicimonas isoalkanivorans strain DSM 19548

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas isoalkanivorans strain DSM 19548 is a Gram-negative, aerobic bacterium characterized by its rod shape. This strain is mesophilic, with an optimal growth temperature of 37°C, indicating its preference for moderate temperature environments. It possesses a single replicon, which is relevant for its genetic stability and replication processes. The strain is cataloged under the accession number FOLG00000000.1, which facilitates its identification and classification in microbial databases. Its aerobic nature suggests that it relies on oxygen for metabolic processes, which is a key characteristic for understanding its ecological role. In a broader biological context, the characteristics of Tropicimonas isoalkanivorans, particularly its mesophilic nature and aerobic metabolism, may imply its adaptation to specific environmental niches where oxygen is available, such as soil or aquatic ecosystems. The ability to thrive at 37°C could also indicate its potential interactions with other organisms in warmer habitats, possibly influencing nutrient cycling and energy flow within those environments. Further research into its ecological role could provide insights into its contributions to microbial communities and ecosystem function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas isoalkanivorans
Strainstrain DSM 19548

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas isoalkanivorans strain DSM 19548 genome assembly,

Gene Summary

Adenine Count

883330 bp

Thymine Count

875776 bp

Guanine Count

1590237 bp

Cytosine Count

1626123 bp

Genome Length

4976641 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

175 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine phosphatase rsbu, regulator of sigma subunitSAMN04488094_10970Not AvailablePositive3067937 - 306922046943.9
8-oxo-dgtp diphosphataseSAMN04488094_10971Not AvailableNegative3069224 - 306965816455.1
molecular chaperone hsp33SAMN04488094_10972Not AvailablePositive3069736 - 307073136246.6
adp-ribose pyrophosphatase yjhb, nudix familySAMN04488094_10973Not AvailablePositive3070718 - 307132322250.6
poly(a) polymeraseSAMN04488094_10974Not AvailablePositive3071323 - 307247141656.0
threonine/homoserine/homoserine lactone efflux proteinSAMN04488094_10975Not AvailablePositive3072526 - 307312221228.1
atp-binding cassette, subfamily b, multidrug efflux pumpSAMN04488094_10976Not AvailablePositive3073237 - 307509068159.6
atp-binding cassette, subfamily bSAMN04488094_10977Not AvailablePositive3075087 - 307693466363.3
23s rrna m(5)u-1939 methyltransferaseSAMN04488094_10978Not AvailablePositive3076931 - 307816043349.0
voltage-gated sodium channelSAMN04488094_10979Not AvailablePositive3078183 - 307900130444.0

Displaying genes 3021 – 3030 of 4860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.