Tropicimonas isoalkanivorans strain DSM 19548

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas isoalkanivorans strain DSM 19548 is a Gram-negative, aerobic bacterium characterized by its rod shape. This strain is mesophilic, with an optimal growth temperature of 37°C, indicating its preference for moderate temperature environments. It possesses a single replicon, which is relevant for its genetic stability and replication processes. The strain is cataloged under the accession number FOLG00000000.1, which facilitates its identification and classification in microbial databases. Its aerobic nature suggests that it relies on oxygen for metabolic processes, which is a key characteristic for understanding its ecological role. In a broader biological context, the characteristics of Tropicimonas isoalkanivorans, particularly its mesophilic nature and aerobic metabolism, may imply its adaptation to specific environmental niches where oxygen is available, such as soil or aquatic ecosystems. The ability to thrive at 37°C could also indicate its potential interactions with other organisms in warmer habitats, possibly influencing nutrient cycling and energy flow within those environments. Further research into its ecological role could provide insights into its contributions to microbial communities and ecosystem function.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas isoalkanivorans
Strainstrain DSM 19548

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatMarine
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas isoalkanivorans strain DSM 19548 genome assembly,

Gene Summary

Adenine Count

883330 bp

Thymine Count

875776 bp

Guanine Count

1590237 bp

Cytosine Count

1626123 bp

Genome Length

4976641 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

175 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-coa synthetase (amp-forming)/amp-acid ligase iiSAMN04488094_103264Not AvailablePositive1789668 - 179119453621.7
acyl-coa synthetase (ndp forming)SAMN04488094_103265Not AvailablePositive1791237 - 179335773665.5
acyl-coa thioester hydrolaseSAMN04488094_103266Not AvailableNegative1793380 - 179383216855.1
glutathione s-transferaseSAMN04488094_103267Not AvailableNegative1793829 - 179485437781.5
crotonobetainyl-coa:carnitine coa-transferase caibSAMN04488094_103268Not AvailableNegative1794859 - 179606442334.2
putative spermidine/putrescine transport system permease proteinSAMN04488094_103269Not AvailableNegative1796061 - 179689729428.2
putative spermidine/putrescine transport system permease proteinSAMN04488094_103270Not AvailableNegative1796885 - 179770029559.6
putative spermidine/putrescine transport system atp-binding proteinSAMN04488094_103271Not AvailableNegative1797697 - 179879140221.6
putative spermidine/putrescine transport system substrate-binding proteinSAMN04488094_103272Not AvailableNegative1798794 - 179984638412.0
acyl-coa dehydrogenaseSAMN04488094_103273Not AvailablePositive1800067 - 180119439522.1

Displaying genes 1801 – 1810 of 4860 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.