Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas isoalkanivorans |
| Strain | strain DSM 19548 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Marine |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
883330 bp
Thymine Count
875776 bp
Guanine Count
1590237 bp
Cytosine Count
1626123 bp
Genome Length
4976641 bp
Protein-coding Genes
4685 genes
Non-Coding Genes
175 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-deoxy-d-gluconate 3-dehydrogenase | SAMN04488094_102259 | Not Available | Negative | 1116106 - 1116834 | 25212.0 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | SAMN04488094_102260 | Not Available | Negative | 1116831 - 1117655 | 29730.3 |
| cupin domain-containing protein | SAMN04488094_102261 | Not Available | Negative | 1117667 - 1117978 | 11309.4 |
| trap transporter, dctm subunit | SAMN04488094_102262 | Not Available | Negative | 1117989 - 1119269 | 45304.2 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN04488094_102263 | Not Available | Negative | 1119269 - 1119823 | 20082.9 |
| tripartite atp-independent transporter solute receptor, dctp family | SAMN04488094_102264 | Not Available | Negative | 1119900 - 1120874 | 35909.4 |
| glucuronate isomerase | SAMN04488094_102265 | Not Available | Negative | 1120904 - 1122310 | 52905.3 |
| transcriptional regulator, gntr family | SAMN04488094_102266 | Not Available | Positive | 1122418 - 1123119 | 26781.9 |
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN04488094_102267 | Not Available | Negative | 1123168 - 1123863 | 25003.6 |
| urea transport system atp-binding protein | SAMN04488094_102268 | Not Available | Negative | 1123865 - 1124605 | 27044.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
