Delftia tsuruhatensis strain LMG 29104

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Delftia

Description

Delftia tsuruhatensis strain LMG 29104 is a notable bacterium primarily found in the roots of plants. This strain possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The presence of flagella suggests that this bacterium is motile, which can enhance its ability to colonize root systems effectively. Delftia tsuruhatensis has been associated with specific plant hosts, namely Triticum aestivum (common wheat) and Ipomoea batatas (sweet potato). This association indicates a potential role in plant-microbe interactions, which may influence plant health and growth. The ecological implications of this relationship could be significant, as beneficial microbes in plant roots are known to enhance nutrient uptake and provide protection against pathogens. The strain is cataloged under the accession FOKN00000000.1, which is essential for reference and further research. Understanding the traits of Delftia tsuruhatensis, particularly its habitat, motility, and host associations, offers insights into its ecological roles in agricultural systems. Its presence in the roots of economically important crops suggests that this bacterium may play a role in supporting sustainable agricultural practices through its interactions with host plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusDelftia
SpeciesDelftia tsuruhatensis
Strainstrain LMG 29104

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Delftia tsuruhatensis strain LMG 29104
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatroots
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Ipomoea batatas
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Delftia tsuruhatensis strain LMG 29104 genome assembly, contig:

Gene Summary

Adenine Count

1102780 bp

Thymine Count

1116253 bp

Guanine Count

2213072 bp

Cytosine Count

2207127 bp

Genome Length

6639232 bp

Protein-coding Genes

5826 genes

Non-Coding Genes

201 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclase (ggdef) domain-containing proteinSAMN05444579_101482Not AvailablePositive538661 - 53983943448.2
3'-5' exonucleaseSAMN05444579_101483Not AvailableNegative539836 - 54063328441.1
enoyl-coa hydratase/carnithine racemaseSAMN05444579_101484Not AvailableNegative540842 - 54165428622.7
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05444579_101485Not AvailableNegative541672 - 54256231707.8
acyl-coa dehydrogenaseSAMN05444579_101486Not AvailableNegative542640 - 54378841866.4
acyl-coa synthetase (amp-forming)/amp-acid ligase iiSAMN05444579_101487Not AvailableNegative543814 - 54537656887.9
alpha-methylacyl-coa racemaseSAMN05444579_101488Not AvailableNegative545386 - 54646838582.1
fatty-acyl-coa synthaseSAMN05444579_101489Not AvailableNegative546603 - 54825560797.8
amino acid/amide abc transporter substrate-binding protein, haat familySAMN05444579_101490Not AvailableNegative548290 - 54951644581.3
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseSAMN05444579_101491Not AvailableNegative549660 - 55053830877.1

Displaying genes 691 – 700 of 6027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.