Delftia tsuruhatensis strain LMG 29104

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Delftia

Description

Delftia tsuruhatensis strain LMG 29104 is a notable bacterium primarily found in the roots of plants. This strain possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The presence of flagella suggests that this bacterium is motile, which can enhance its ability to colonize root systems effectively. Delftia tsuruhatensis has been associated with specific plant hosts, namely Triticum aestivum (common wheat) and Ipomoea batatas (sweet potato). This association indicates a potential role in plant-microbe interactions, which may influence plant health and growth. The ecological implications of this relationship could be significant, as beneficial microbes in plant roots are known to enhance nutrient uptake and provide protection against pathogens. The strain is cataloged under the accession FOKN00000000.1, which is essential for reference and further research. Understanding the traits of Delftia tsuruhatensis, particularly its habitat, motility, and host associations, offers insights into its ecological roles in agricultural systems. Its presence in the roots of economically important crops suggests that this bacterium may play a role in supporting sustainable agricultural practices through its interactions with host plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusDelftia
SpeciesDelftia tsuruhatensis
Strainstrain LMG 29104

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Delftia tsuruhatensis strain LMG 29104
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatroots
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Ipomoea batatas
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Delftia tsuruhatensis strain LMG 29104 genome assembly, contig:

Gene Summary

Adenine Count

1102780 bp

Thymine Count

1116253 bp

Guanine Count

2213072 bp

Cytosine Count

2207127 bp

Genome Length

6639232 bp

Protein-coding Genes

5826 genes

Non-Coding Genes

201 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding transcriptional regulator, lysr familySAMN05444579_101320Not AvailableNegative351712 - 35264133784.5
uncharacterized protein ycsi, upf0317 familySAMN05444579_101321Not AvailablePositive352768 - 35355028606.2
5-oxoprolinase (atp-hydrolysing)SAMN05444579_101322Not AvailablePositive353784 - 357416130165.0
sugar phosphate permeaseSAMN05444579_101323Not AvailablePositive357541 - 35883046035.9
hypothetical proteinSAMN05444579_101324Not AvailableNegative358859 - 35936818674.5
sugar-phosphataseSAMN05444579_101325Not AvailablePositive359476 - 36018024840.7
rna polymerase sigma-70 factor, ecf subfamilySAMN05444579_101326Not AvailablePositive360343 - 36096323139.4
fecr family proteinSAMN05444579_101327Not AvailablePositive360960 - 36199437365.5
outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acidSAMN05444579_101328Not AvailablePositive362266 - 36487293006.4
calcineurin-like phosphoesteraseSAMN05444579_101329Not AvailableNegative365069 - 36615140214.6

Displaying genes 531 – 540 of 6027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.