Delftia tsuruhatensis strain LMG 29104

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Delftia

Description

Delftia tsuruhatensis strain LMG 29104 is a notable bacterium primarily found in the roots of plants. This strain possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various environments. The presence of flagella suggests that this bacterium is motile, which can enhance its ability to colonize root systems effectively. Delftia tsuruhatensis has been associated with specific plant hosts, namely Triticum aestivum (common wheat) and Ipomoea batatas (sweet potato). This association indicates a potential role in plant-microbe interactions, which may influence plant health and growth. The ecological implications of this relationship could be significant, as beneficial microbes in plant roots are known to enhance nutrient uptake and provide protection against pathogens. The strain is cataloged under the accession FOKN00000000.1, which is essential for reference and further research. Understanding the traits of Delftia tsuruhatensis, particularly its habitat, motility, and host associations, offers insights into its ecological roles in agricultural systems. Its presence in the roots of economically important crops suggests that this bacterium may play a role in supporting sustainable agricultural practices through its interactions with host plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusDelftia
SpeciesDelftia tsuruhatensis
Strainstrain LMG 29104

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Delftia tsuruhatensis strain LMG 29104
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatroots
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Ipomoea batatas
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Delftia tsuruhatensis strain LMG 29104 genome assembly, contig:

Gene Summary

Adenine Count

1102780 bp

Thymine Count

1116253 bp

Guanine Count

2213072 bp

Cytosine Count

2207127 bp

Genome Length

6639232 bp

Protein-coding Genes

5826 genes

Non-Coding Genes

201 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molybdopterin synthase subunit moaeSAMN05444579_10190Not AvailablePositive89321 - 8978217006.3
permease of the drug/metabolite transporter (dmt) superfamilySAMN05444579_10191Not AvailableNegative89792 - 9072133156.3
arac family transcriptional regulatorSAMN05444579_10192Not AvailablePositive90790 - 9169833675.6
atp-dependent clp protease atp-binding subunit clpbSAMN05444579_10193Not AvailablePositive91832 - 9444496324.7
hypothetical proteinSAMN05444579_10194Not AvailablePositive94475 - 9483412951.9
coniferyl-aldehyde dehydrogenaseSAMN05444579_10195Not AvailablePositive95045 - 9648152832.1
acetyltransferase (gnat) family proteinSAMN05444579_10196Not AvailablePositive96813 - 9725916756.9
methylase of polypeptide chain release factorsSAMN05444579_10197Not AvailablePositive97310 - 9852144211.9
hypothetical proteinSAMN05444579_10198Not AvailableNegative98549 - 9909419883.9
pp_00099SAMN05444579_10199Not AvailablePositive99322 - 100299Not Available

Displaying genes 301 – 310 of 6027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.