Pseudomonas otitidis strain DSM 17224

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Metapseudomonas

Description

Pseudomonas otitidis strain DSM 17224 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolic processes. This oxygen requirement is a significant trait, as it can influence its habitat and interactions with other microorganisms in various environments. The strain is characterized by having a single replicon, which pertains to its genetic structure, specifically its chromosomal configuration. This trait is essential for understanding its genetic stability and replication mechanisms, as a single replicon can simplify the regulation of genetic processes compared to strains with multiple replicons. The strain is cataloged under the accession number FOJP00000000.1, which provides a reference for researchers seeking further genomic information or related studies. This accession allows for easier access to genetic data and facilitates comparative analyses with other strains within the Pseudomonas genus. In terms of ecological insight, the aerobic nature of Pseudomonas otitidis suggests its potential role in various environments, including soil and aquatic ecosystems, where oxygen is present. Its ability to thrive in such conditions may contribute to nutrient cycling and the degradation of organic materials, showcasing its importance in maintaining ecological balance. As a member of the Pseudomonas genus, known for its diverse metabolic capabilities, this strain could play a role in bioremediation processes or in the context of plant-microbe interactions, although specific applications require further investigation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusMetapseudomonas
SpeciesMetapseudomonas otitidis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas otitidis strain DSM 17224 genome assembly, contig:

Gene Summary

Adenine Count

1042038 bp

Thymine Count

1060678 bp

Guanine Count

2130900 bp

Cytosine Count

2108534 bp

Genome Length

6344741 bp

Protein-coding Genes

5674 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metallo-beta-lactamase family proteinSAMN05216263_102267Not AvailableNegative865541 - 86689949876.2
thiol-disulfide isomerase or thioredoxinSAMN05216263_102268Not AvailablePositive867061 - 86789129945.8
transglutaminase-like cysteine proteinase btlcpSAMN05216263_102269Not AvailablePositive867969 - 86866725578.9
diguanylate cyclase (ggdef) domain-containing proteinSAMN05216263_102270Not AvailablePositive868678 - 87061571452.2
flagella basal body p-ring formation protein flgaSAMN05216263_102271Not AvailableNegative870622 - 87139827517.3
flagellar basal-body rod protein flgbSAMN05216263_102272Not AvailablePositive871499 - 87185813643.2
flagellar basal-body rod protein flgcSAMN05216263_102273Not AvailablePositive871861 - 87228915523.4
flagellar basal-body rod modification protein flgdSAMN05216263_102274Not AvailablePositive872289 - 87294823369.7
flagellar hook protein flgeSAMN05216263_102275Not AvailablePositive872969 - 87415340926.7
flagellar basal-body rod protein flgfSAMN05216263_102276Not AvailablePositive874164 - 87489525451.4

Displaying genes 921 – 930 of 5843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.