Pseudomonas otitidis strain DSM 17224

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Metapseudomonas

Description

Pseudomonas otitidis strain DSM 17224 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolic processes. This oxygen requirement is a significant trait, as it can influence its habitat and interactions with other microorganisms in various environments. The strain is characterized by having a single replicon, which pertains to its genetic structure, specifically its chromosomal configuration. This trait is essential for understanding its genetic stability and replication mechanisms, as a single replicon can simplify the regulation of genetic processes compared to strains with multiple replicons. The strain is cataloged under the accession number FOJP00000000.1, which provides a reference for researchers seeking further genomic information or related studies. This accession allows for easier access to genetic data and facilitates comparative analyses with other strains within the Pseudomonas genus. In terms of ecological insight, the aerobic nature of Pseudomonas otitidis suggests its potential role in various environments, including soil and aquatic ecosystems, where oxygen is present. Its ability to thrive in such conditions may contribute to nutrient cycling and the degradation of organic materials, showcasing its importance in maintaining ecological balance. As a member of the Pseudomonas genus, known for its diverse metabolic capabilities, this strain could play a role in bioremediation processes or in the context of plant-microbe interactions, although specific applications require further investigation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusMetapseudomonas
SpeciesMetapseudomonas otitidis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas otitidis strain DSM 17224 genome assembly, contig:

Gene Summary

Adenine Count

1042038 bp

Thymine Count

1060678 bp

Guanine Count

2130900 bp

Cytosine Count

2108534 bp

Genome Length

6344741 bp

Protein-coding Genes

5674 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fecr family proteinSAMN05216263_10232Not AvailablePositive586027 - 58699235614.0
predicted glycoside hydrolase or deacetylase chbg, upf0249 familySAMN05216263_10233Not AvailableNegative587002 - 58781129696.5
putative flippase gtra (transmembrane translocase of bactoprenol-linked glucose)SAMN05216263_10234Not AvailableNegative587808 - 58819714050.7
glycosyltransferase involved in cell wall bisynthesisSAMN05216263_10235Not AvailableNegative588194 - 58919538072.2
4-amino-4-deoxy-l-arabinose transferaseSAMN05216263_10236Not AvailableNegative589188 - 59066354808.5
methyl-accepting chemotaxis sensory transducer with pas/pac sensorSAMN05216263_10237Not AvailableNegative590824 - 59212848042.7
peptidyl-prolyl cis-trans isomerase cSAMN05216263_10238Not AvailableNegative592247 - 59252510307.8
twitching motility protein piluSAMN05216263_10239Not AvailablePositive592684 - 59388343919.7
polar amino acid transport system substrate-binding proteinSAMN05216263_10240Not AvailableNegative593912 - 59471829987.5
serine aminopeptidase, s33SAMN05216263_10241Not AvailableNegative594732 - 59533721780.0

Displaying genes 691 – 700 of 5843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.