Pseudomonas otitidis strain DSM 17224

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Metapseudomonas

Description

Pseudomonas otitidis strain DSM 17224 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolic processes. This oxygen requirement is a significant trait, as it can influence its habitat and interactions with other microorganisms in various environments. The strain is characterized by having a single replicon, which pertains to its genetic structure, specifically its chromosomal configuration. This trait is essential for understanding its genetic stability and replication mechanisms, as a single replicon can simplify the regulation of genetic processes compared to strains with multiple replicons. The strain is cataloged under the accession number FOJP00000000.1, which provides a reference for researchers seeking further genomic information or related studies. This accession allows for easier access to genetic data and facilitates comparative analyses with other strains within the Pseudomonas genus. In terms of ecological insight, the aerobic nature of Pseudomonas otitidis suggests its potential role in various environments, including soil and aquatic ecosystems, where oxygen is present. Its ability to thrive in such conditions may contribute to nutrient cycling and the degradation of organic materials, showcasing its importance in maintaining ecological balance. As a member of the Pseudomonas genus, known for its diverse metabolic capabilities, this strain could play a role in bioremediation processes or in the context of plant-microbe interactions, although specific applications require further investigation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusMetapseudomonas
SpeciesMetapseudomonas otitidis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas otitidis strain DSM 17224 genome assembly, contig:

Gene Summary

Adenine Count

1042038 bp

Thymine Count

1060678 bp

Guanine Count

2130900 bp

Cytosine Count

2108534 bp

Genome Length

6344741 bp

Protein-coding Genes

5674 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamilySAMN05216263_101118Not AvailablePositive118471 - 11970346028.1
membrane protein deda, snare-associated domainSAMN05216263_101119Not AvailableNegative119705 - 12030122687.1
porphobilinogen synthaseSAMN05216263_101120Not AvailablePositive120499 - 12155138366.9
polyphosphate kinaseSAMN05216263_101121Not AvailablePositive121571 - 12377582366.6
exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphataseSAMN05216263_101122Not AvailableNegative123836 - 12534156470.9
thioredoxinSAMN05216263_101123Not AvailablePositive125629 - 12595511789.2
transcription termination factor rhoSAMN05216263_101124Not AvailablePositive126196 - 12745847153.3
4-hydroxy-3-polyprenylbenzoate decarboxylaseSAMN05216263_101125Not AvailablePositive127588 - 12905454704.1
cdp-4-dehydro-6-deoxyglucose reductaseSAMN05216263_101126Not AvailablePositive129119 - 13007234487.2
lysr family transcriptional regulator, glycine cleavage system transcriptional activatorSAMN05216263_101127Not AvailableNegative130100 - 13099632754.6

Displaying genes 261 – 270 of 5843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.