Pseudomonas otitidis strain DSM 17224

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Metapseudomonas

Description

Pseudomonas otitidis strain DSM 17224 is an aerobic bacterium, indicating that it requires oxygen for its growth and metabolic processes. This oxygen requirement is a significant trait, as it can influence its habitat and interactions with other microorganisms in various environments. The strain is characterized by having a single replicon, which pertains to its genetic structure, specifically its chromosomal configuration. This trait is essential for understanding its genetic stability and replication mechanisms, as a single replicon can simplify the regulation of genetic processes compared to strains with multiple replicons. The strain is cataloged under the accession number FOJP00000000.1, which provides a reference for researchers seeking further genomic information or related studies. This accession allows for easier access to genetic data and facilitates comparative analyses with other strains within the Pseudomonas genus. In terms of ecological insight, the aerobic nature of Pseudomonas otitidis suggests its potential role in various environments, including soil and aquatic ecosystems, where oxygen is present. Its ability to thrive in such conditions may contribute to nutrient cycling and the degradation of organic materials, showcasing its importance in maintaining ecological balance. As a member of the Pseudomonas genus, known for its diverse metabolic capabilities, this strain could play a role in bioremediation processes or in the context of plant-microbe interactions, although specific applications require further investigation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusMetapseudomonas
SpeciesMetapseudomonas otitidis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas otitidis strain DSM 17224 genome assembly, contig:

Gene Summary

Adenine Count

1042038 bp

Thymine Count

1060678 bp

Guanine Count

2130900 bp

Cytosine Count

2108534 bp

Genome Length

6344741 bp

Protein-coding Genes

5674 genes

Non-Coding Genes

169 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integrase/recombinase xercSAMN05216263_10179Not AvailableNegative84528 - 8543034108.9
hypothetical proteinSAMN05216263_10180Not AvailableNegative85453 - 8615425854.1
diaminopimelate epimeraseSAMN05216263_10181Not AvailableNegative86168 - 8699830553.9
diaminopimelate decarboxylaseSAMN05216263_10182Not AvailableNegative87003 - 8825045216.9
lipoprotein-attachment site-containing proteinSAMN05216263_10183Not AvailableNegative88260 - 883854305.35
arac-type dna-binding proteinSAMN05216263_10184Not AvailablePositive88536 - 8957338112.6
cyay proteinSAMN05216263_10185Not AvailablePositive89613 - 8994512462.2
regulator of nucleoside diphosphate kinaseSAMN05216263_10186Not AvailablePositive90277 - 9068414604.4
adenylate cyclase, class 1SAMN05216263_10187Not AvailableNegative90703 - 93549108330.0
tigr02647 family proteinSAMN05216263_10188Not AvailableNegative93635 - 938898947.71

Displaying genes 221 – 230 of 5843 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.