Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Roseivirgaceae
Genus
Roseivirga
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Roseivirgaceae |
| Genus | Roseivirga |
| Species | Roseivirga pacifica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1371905 bp
Thymine Count
1333517 bp
Guanine Count
958689 bp
Cytosine Count
996660 bp
Genome Length
4660771 bp
Protein-coding Genes
4021 genes
Non-Coding Genes
52 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-carotene ketolase (crtw type) | SAMN05216290_0456 | Not Available | Negative | 512847 - 513551 | 27655.4 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | SAMN05216290_0457 | Not Available | Negative | 513567 - 514412 | 31718.9 |
| phytoene/squalene synthetase | SAMN05216290_0458 | Not Available | Negative | 514479 - 515315 | 32577.2 |
| phytoene desaturase | SAMN05216290_0459 | Not Available | Negative | 515337 - 516812 | 54600.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05216290_0460 | Not Available | Negative | 516829 - 517335 | 19932.2 |
| dna-binding transcriptional regulator, merr family | SAMN05216290_0461 | Not Available | Negative | 517577 - 518488 | 34611.8 |
| beta-carotene 3-hydroxylase | SAMN05216290_0462 | Not Available | Negative | 518494 - 518949 | 17627.9 |
| putative membrane protein | SAMN05216290_0463 | Not Available | Negative | 519014 - 519679 | 24995.2 |
| protein of unknown function | SAMN05216290_0464 | Not Available | Positive | 519737 - 520039 | 11755.3 |
| l-amino acid n-acyltransferase ynca | SAMN05216290_0465 | Not Available | Negative | 520036 - 520494 | 17437.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
