Fabibacter pacificus strain CGMCC 1.12402

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Roseivirgaceae

Genus

Roseivirga

Description

Fabibacter pacificus strain CGMCC 1.12402 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is mesophilic, with an optimal growth temperature of 37°C, which positions it well within the temperature range favorable for many environmental and biological processes. The strain possesses a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and adaptation within its ecological niche. It is cataloged under the accession number FOIR00000000.1, which provides a reference point for genomic and taxonomic studies. The aerobic nature of Fabibacter pacificus suggests its reliance on oxygen for growth, which can have significant implications for its habitat. Typically, such organisms inhabit oxygen-rich environments, which can include marine ecosystems or soil profiles where oxygen is readily available. Understanding the growth conditions and metabolic requirements of this strain can provide insights into its ecological role and potential applications in biotechnological contexts, such as bioremediation or nutrient cycling. Overall, the traits of Fabibacter pacificus strain CGMCC 1.12402 highlight its adaptability to specific environmental conditions, making it a candidate for further research in microbial ecology and applications that leverage its metabolic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyRoseivirgaceae
GenusRoseivirga
SpeciesRoseivirga pacifica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fabibacter pacificus strain CGMCC 1.12402 genome assembly, contig:

Gene Summary

Adenine Count

1371905 bp

Thymine Count

1333517 bp

Guanine Count

958689 bp

Cytosine Count

996660 bp

Genome Length

4660771 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
do/deqq family serine proteaseSAMN05216290_0239Not AvailablePositive265196 - 26667753878.7
transcriptional regulator, arac familySAMN05216290_0240Not AvailableNegative266780 - 26766734004.6
por secretion system c-terminal sorting domain-containing proteinSAMN05216290_0241Not AvailablePositive267891 - 26845720553.8
outer membrane protein tolcSAMN05216290_0242Not AvailablePositive268627 - 27098187982.7
rnd family efflux transporter, mfp subunitSAMN05216290_0243Not AvailablePositive270990 - 27207539463.2
multidrug efflux pump subunit acrbSAMN05216290_0244Not AvailablePositive272106 - 275219114501.0
ion channelSAMN05216290_0245Not AvailablePositive275212 - 27589825653.5
chromosomal replication initiator protein dnaaSAMN05216290_0246Not AvailableNegative275895 - 27731954345.9
methylmalonyl-coa mutase c-terminal domain-containing protein/methylmalonyl-coa mutase n-terminal domain-containing proteinSAMN05216290_0247Not AvailablePositive277590 - 280757115851.0
hypothetical proteinSAMN05216290_0248Not AvailablePositive280811 - 28198945455.5

Displaying genes 241 – 250 of 4073 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.