Fabibacter pacificus strain CGMCC 1.12402

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Roseivirgaceae

Genus

Roseivirga

Description

Fabibacter pacificus strain CGMCC 1.12402 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is mesophilic, with an optimal growth temperature of 37°C, which positions it well within the temperature range favorable for many environmental and biological processes. The strain possesses a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and adaptation within its ecological niche. It is cataloged under the accession number FOIR00000000.1, which provides a reference point for genomic and taxonomic studies. The aerobic nature of Fabibacter pacificus suggests its reliance on oxygen for growth, which can have significant implications for its habitat. Typically, such organisms inhabit oxygen-rich environments, which can include marine ecosystems or soil profiles where oxygen is readily available. Understanding the growth conditions and metabolic requirements of this strain can provide insights into its ecological role and potential applications in biotechnological contexts, such as bioremediation or nutrient cycling. Overall, the traits of Fabibacter pacificus strain CGMCC 1.12402 highlight its adaptability to specific environmental conditions, making it a candidate for further research in microbial ecology and applications that leverage its metabolic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyRoseivirgaceae
GenusRoseivirga
SpeciesRoseivirga pacifica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fabibacter pacificus strain CGMCC 1.12402 genome assembly, contig:

Gene Summary

Adenine Count

1371905 bp

Thymine Count

1333517 bp

Guanine Count

958689 bp

Cytosine Count

996660 bp

Genome Length

4660771 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
malate dehydrogenase (oxaloacetate-decarboxylating)SAMN05216290_1537Not AvailableNegative1721952 - 172317843816.0
ceramidaseSAMN05216290_1538Not AvailableNegative1723251 - 172394026501.9
deoxyribodipyrimidine photo-lyase (single-stranded dna-specific)SAMN05216290_1539Not AvailableNegative1724059 - 172532749153.7
deoxyribodipyrimidine photolyase-related proteinSAMN05216290_1540Not AvailableNegative1725324 - 172685660512.4
deoxyribodipyrimidine photo-lyase family protein (cryptochrome)SAMN05216290_1541Not AvailableNegative1727027 - 172849357140.5
carboxypeptidase c (cathepsin a)SAMN05216290_1542Not AvailableNegative1728546 - 173005155628.2
hypothetical proteinSAMN05216290_1543Not AvailableNegative1730143 - 173086227566.6
3',5'-cyclic amp phosphodiesterase cpdaSAMN05216290_1544Not AvailablePositive1731000 - 173282668773.2
abc-type antimicrobial peptide transport system, permease componentSAMN05216290_1545Not AvailableNegative1732908 - 173549997769.5
transcriptional regulator padr-like family proteinSAMN05216290_1546Not AvailableNegative1735499 - 173583712415.9

Displaying genes 1541 – 1550 of 4073 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.